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1,297 Commits
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1297 Commits (1a6d2a740be33d769111ed03104bb5fa73b2ad50)

Author SHA1 Message Date
oahzxl 1a6d2a740b take apart chunk code gen 2023-01-06 14:14:45 +08:00
oahzxl d1f0773182 rename 2023-01-06 11:48:33 +08:00
oahzxl 06a5355d98 update test 2023-01-06 11:44:01 +08:00
oahzxl efb1c64c30 restruct dir 2023-01-06 11:39:26 +08:00
oahzxl 27ab524096 refactor structure 2023-01-06 11:07:57 +08:00
oahzxl 71e72c4890 last version of benchmark 2023-01-05 17:54:25 +08:00
oahzxl 55cb713f36 update min memory stratege, reduce mem usage by 30% 2023-01-05 11:29:22 +08:00
oahzxl 9c5e028a62 fix bug again 2023-01-02 00:27:11 +08:00
oahzxl 7fd3b45af2 fix a bug in ones like, dont gen chunk if dim size is 1 2023-01-02 00:04:47 +08:00
oahzxl 5f24f4fd55 support ones_like, add prompt if fit mode search fail 2022-12-31 16:29:43 +08:00
oahzxl 80efd70c72 improve reorder efficeincy 2022-12-31 13:44:46 +08:00
oahzxl 966e4ea0cb add reorder in mem estimator 2022-12-31 02:20:07 +08:00
oahzxl e5a5fbb8a9 update source add 2022-12-31 01:00:06 +08:00
oahzxl f5515e9978 use max_mem to control stratge 2022-12-29 16:55:47 +08:00
oahzxl f7d8092c84 align openfold 2022-12-29 16:01:05 +08:00
oahzxl 5c4df01af3 update openfold 2022-12-29 15:54:08 +08:00
oahzxl 289f3a45c2 init openfold 2022-12-29 15:01:15 +08:00
oahzxl efe6fe3a33 code style 2022-12-29 14:47:47 +08:00
oahzxl 7a23deb584 code style 2022-12-29 14:47:16 +08:00
oahzxl 5a916c0adb add print 2022-12-29 14:42:29 +08:00
oahzxl 1d7ca02301 add benchmark 2022-12-29 14:28:38 +08:00
oahzxl fff493c202 init openfold 2022-12-29 11:48:11 +08:00
oahzxl 69af93107f add evoformer openfold init 2022-12-29 11:28:25 +08:00
oahzxl cb2dd1a106 turn off print mem 2022-12-27 15:01:58 +08:00
oahzxl a2b4755ce9 code style 2022-12-27 14:49:52 +08:00
oahzxl 6be89a3b82 add chunksize in emit, fix bug in reassgin shape 2022-12-27 14:48:25 +08:00
oahzxl 378a49dc6c code style 2022-12-27 09:48:59 +08:00
oahzxl 8f5a0edfab add chunk select 2022-12-26 23:08:49 +08:00
oahzxl 1b8a066592 add chunk select class 2022-12-26 15:28:01 +08:00
oahzxl 786a398a6b code style 2022-12-23 17:42:51 +08:00
oahzxl 9b1b890347 update run 2022-12-23 17:32:11 +08:00
oahzxl 51ef8384c1 finish node reorder 2022-12-23 17:25:36 +08:00
oahzxl 884a228ea6 reorder nodes 2022-12-23 17:06:07 +08:00
oahzxl e0ae68e736 code style 2022-12-23 15:49:04 +08:00
oahzxl fa5e6fbf96 code style 2022-12-23 15:38:37 +08:00
oahzxl 4f5e105af3 remove flow tracer 2022-12-23 15:34:41 +08:00
oahzxl 4d89525fc2 remove abandoned function 2022-12-23 14:28:49 +08:00
oahzxl 49ba619085 code style 2022-12-23 14:26:43 +08:00
oahzxl d309e9338b adapt codegen to prepose node 2022-12-23 14:26:12 +08:00
oahzxl 522f017418 code style 2022-12-23 13:41:51 +08:00
oahzxl 774d34f1aa refactor flow search 2022-12-23 13:41:10 +08:00
oahzxl ded1005667 format code 2022-12-21 15:03:08 +08:00
oahzxl d361d533e8 refactor flow tracer 2022-12-21 15:01:03 +08:00
oahzxl d734529a39 move flow tracer 2022-12-21 15:00:24 +08:00
oahzxl 9d516fa68f fix layernorm 2022-12-18 20:37:55 +08:00
oahzxl e66a18a0bf optimise search 2022-12-16 15:06:39 +08:00
oahzxl e83e3c6154 update memory estimate 2022-12-16 11:09:35 +08:00
oahzxl de65e6c3e8 support output 2022-12-13 11:00:51 +08:00
oahzxl cda3e8572a support index dupilictae and update loop 2022-12-13 10:02:26 +08:00
oahzxl 1e0fd11bc1 support check_index_duplicate 2022-12-13 10:01:30 +08:00