Introduced some options for compactor concurrency (#66)

* Tool for CLI compactions.
* Use concurrency when populating symbols for multiple blocks.
* Use concurrency when writing to multiple output blocks.

Signed-off-by: Peter Štibraný <pstibrany@gmail.com>

cmd/compact/main.go

@@ -0,0 +1,96 @@
+package main
+
+import (
+	"context"
+	"flag"
+	"log"
+	"os"
+	"os/signal"
+	"runtime/pprof"
+	"syscall"
+
+	golog "github.com/go-kit/log"
+
+	"github.com/prometheus/prometheus/tsdb"
+)
+
+func main() {
+	var (
+		outputDir        string
+		shardCount       int
+		cpuProf          string
+		segmentSizeMB    int64
+		maxClosingBlocks int
+		symbolFlushers   int
+	)
+
+	flag.StringVar(&outputDir, "output-dir", ".", "Output directory for new block(s)")
+	flag.StringVar(&cpuProf, "cpuprofile", "", "Where to store CPU profile (it not empty)")
+	flag.IntVar(&shardCount, "shard-count", 1, "Number of shards for splitting")
+	flag.Int64Var(&segmentSizeMB, "segment-file-size", 512, "Size of segment file")
+	flag.IntVar(&maxClosingBlocks, "max-closing-blocks", 2, "Number of blocks that can close at once during split compaction")
+	flag.IntVar(&symbolFlushers, "symbol-flushers", 4, "Number of symbol flushers used during split compaction")
+
+	flag.Parse()
+
+	logger := golog.NewLogfmtLogger(os.Stderr)
+
+	var blockDirs []string
+	var blocks []*tsdb.Block
+	for _, d := range flag.Args() {
+		s, err := os.Stat(d)
+		if err != nil {
+			panic(err)
+		}
+		if !s.IsDir() {
+			log.Fatalln("not a directory: ", d)
+		}
+
+		blockDirs = append(blockDirs, d)
+
+		b, err := tsdb.OpenBlock(logger, d, nil)
+		if err != nil {
+			log.Fatalln("failed to open block:", d, err)
+		}
+
+		blocks = append(blocks, b)
+		defer b.Close()
+	}
+
+	if len(blockDirs) == 0 {
+		log.Fatalln("no blocks to compact")
+	}
+
+	if cpuProf != "" {
+		f, err := os.Create(cpuProf)
+		if err != nil {
+			log.Fatalln(err)
+		}
+
+		log.Println("writing to", cpuProf)
+		err = pprof.StartCPUProfile(f)
+		if err != nil {
+			log.Fatalln(err)
+		}
+
+		defer pprof.StopCPUProfile()
+	}
+
+	ctx, cancel := signal.NotifyContext(context.Background(), syscall.SIGINT, syscall.SIGTERM)
+	defer cancel()
+
+	c, err := tsdb.NewLeveledCompactorWithChunkSize(ctx, nil, logger, []int64{0}, nil, segmentSizeMB*1024*1024, nil)
+	if err != nil {
+		log.Fatalln("creating compator", err)
+	}
+
+	opts := tsdb.DefaultConcurrencyOptions()
+	opts.MaxClosingBlocks = maxClosingBlocks
+	opts.SymbolsFlushersCount = symbolFlushers
+	c.SetConcurrencyOptions(opts)
+
+	_, err = c.CompactWithSplitting(outputDir, blockDirs, blocks, uint64(shardCount))
+	if err != nil {
+		log.Fatalln("compacting", err)
+	}
+}

tsdb/async_block_writer.go

@@ -0,0 +1,166 @@
+package tsdb
+
+import (
+	"context"
+	"fmt"
+
+	"github.com/pkg/errors"
+	"go.uber.org/atomic"
+	"golang.org/x/sync/semaphore"
+
+	"github.com/prometheus/prometheus/model/labels"
+	"github.com/prometheus/prometheus/storage"
+	"github.com/prometheus/prometheus/tsdb/chunkenc"
+	"github.com/prometheus/prometheus/tsdb/chunks"
+)
+
+// asyncBlockWriter runs a background goroutine that writes series and chunks to the block asynchronously.
+type asyncBlockWriter struct {
+	chunkPool chunkenc.Pool // Where to return chunks after writing.
+
+	chunkw ChunkWriter
+	indexw IndexWriter
+
+	closeSemaphore *semaphore.Weighted
+
+	seriesChan chan seriesToWrite
+	finishedCh chan asyncBlockWriterResult
+
+	closed bool
+	result asyncBlockWriterResult
+}
+
+type asyncBlockWriterResult struct {
+	stats BlockStats
+	err   error
+}
+
+type seriesToWrite struct {
+	lbls labels.Labels
+	chks []chunks.Meta
+}
+
+func newAsyncBlockWriter(chunkPool chunkenc.Pool, chunkw ChunkWriter, indexw IndexWriter, closeSema *semaphore.Weighted) *asyncBlockWriter {
+	bw := &asyncBlockWriter{
+		chunkPool:      chunkPool,
+		chunkw:         chunkw,
+		indexw:         indexw,
+		seriesChan:     make(chan seriesToWrite, 64),
+		finishedCh:     make(chan asyncBlockWriterResult, 1),
+		closeSemaphore: closeSema,
+	}
+
+	go bw.loop()
+	return bw
+}
+
+// loop doing the writes. Return value is only used by defer statement, and is sent to the channel,
+// before closing it.
+func (bw *asyncBlockWriter) loop() (res asyncBlockWriterResult) {
+	defer func() {
+		bw.finishedCh <- res
+		close(bw.finishedCh)
+	}()
+
+	stats := BlockStats{}
+	ref := storage.SeriesRef(0)
+	for sw := range bw.seriesChan {
+		if err := bw.chunkw.WriteChunks(sw.chks...); err != nil {
+			return asyncBlockWriterResult{err: errors.Wrap(err, "write chunks")}
+		}
+		if err := bw.indexw.AddSeries(ref, sw.lbls, sw.chks...); err != nil {
+			return asyncBlockWriterResult{err: errors.Wrap(err, "add series")}
+		}
+
+		stats.NumChunks += uint64(len(sw.chks))
+		stats.NumSeries++
+		for _, chk := range sw.chks {
+			stats.NumSamples += uint64(chk.Chunk.NumSamples())
+		}
+
+		for _, chk := range sw.chks {
+			if err := bw.chunkPool.Put(chk.Chunk); err != nil {
+				return asyncBlockWriterResult{err: errors.Wrap(err, "put chunk")}
+			}
+		}
+		ref++
+	}
+
+	err := bw.closeSemaphore.Acquire(context.Background(), 1)
+	if err != nil {
+		return asyncBlockWriterResult{err: errors.Wrap(err, "failed to acquire semaphore before closing writers")}
+	}
+	defer bw.closeSemaphore.Release(1)
+
+	// If everything went fine with writing so far, close writers.
+	if err := bw.chunkw.Close(); err != nil {
+		return asyncBlockWriterResult{err: errors.Wrap(err, "closing chunk writer")}
+	}
+	if err := bw.indexw.Close(); err != nil {
+		return asyncBlockWriterResult{err: errors.Wrap(err, "closing index writer")}
+	}
+
+	return asyncBlockWriterResult{stats: stats}
+}
+
+func (bw *asyncBlockWriter) addSeries(lbls labels.Labels, chks []chunks.Meta) error {
+	select {
+	case bw.seriesChan <- seriesToWrite{lbls: lbls, chks: chks}:
+		return nil
+	case result, ok := <-bw.finishedCh:
+		if ok {
+			bw.result = result
+		}
+		return fmt.Errorf("asyncBlockWriter doesn't run anymore")
+	}
+}
+
+func (bw *asyncBlockWriter) closeAsync() {
+	if !bw.closed {
+		bw.closed = true
+
+		close(bw.seriesChan)
+	}
+}
+
+func (bw *asyncBlockWriter) waitFinished() (BlockStats, error) {
+	// Wait for flusher to finish.
+	result, ok := <-bw.finishedCh
+	if ok {
+		bw.result = result
+	}
+
+	return bw.result.stats, bw.result.err
+}
+
+type preventDoubleCloseIndexWriter struct {
+	IndexWriter
+	closed atomic.Bool
+}
+
+func newPreventDoubleCloseIndexWriter(iw IndexWriter) *preventDoubleCloseIndexWriter {
+	return &preventDoubleCloseIndexWriter{IndexWriter: iw}
+}
+
+func (p *preventDoubleCloseIndexWriter) Close() error {
+	if p.closed.CAS(false, true) {
+		return p.IndexWriter.Close()
+	}
+	return nil
+}
+
+type preventDoubleCloseChunkWriter struct {
+	ChunkWriter
+	closed atomic.Bool
+}
+
+func newPreventDoubleCloseChunkWriter(cw ChunkWriter) *preventDoubleCloseChunkWriter {
+	return &preventDoubleCloseChunkWriter{ChunkWriter: cw}
+}
+
+func (p *preventDoubleCloseChunkWriter) Close() error {
+	if p.closed.CAS(false, true) {
+		return p.ChunkWriter.Close()
+	}
+	return nil
+}

tsdb/compact.go

@@ -29,6 +29,7 @@ import (
 	"github.com/oklog/ulid"
 	"github.com/pkg/errors"
 	"github.com/prometheus/client_golang/prometheus"
+	"golang.org/x/sync/semaphore"
 
 	"github.com/prometheus/prometheus/model/labels"
 	"github.com/prometheus/prometheus/storage"
@@ -84,6 +85,8 @@ type LeveledCompactor struct {
 	ctx                      context.Context
 	maxBlockChunkSegmentSize int64
 	mergeFunc                storage.VerticalChunkSeriesMergeFunc
+
+	concurrencyOpts ConcurrencyOptions
 }
 
 type compactorMetrics struct {
@@ -172,9 +175,27 @@ func NewLeveledCompactorWithChunkSize(ctx context.Context, r prometheus.Register
 		ctx:                      ctx,
 		maxBlockChunkSegmentSize: maxBlockChunkSegmentSize,
 		mergeFunc:                mergeFunc,
+		concurrencyOpts:          DefaultConcurrencyOptions(),
 	}, nil
 }
 
+// ConcurrencyOptions used by LeveledCompactor.
+type ConcurrencyOptions struct {
+	MaxClosingBlocks     int // Max number of blocks that can be closed concurrently during split compaction.
+	SymbolsFlushersCount int // Number of symbols flushers used when doing split compaction.
+}
+
+func DefaultConcurrencyOptions() ConcurrencyOptions {
+	return ConcurrencyOptions{
+		MaxClosingBlocks:     1,
+		SymbolsFlushersCount: 1,
+	}
+}
+
+func (c *LeveledCompactor) SetConcurrencyOptions(opts ConcurrencyOptions) {
+	c.concurrencyOpts = opts
+}
+
 type dirMeta struct {
 	dir  string
 	meta *BlockMeta
@@ -646,6 +667,7 @@ func (c *LeveledCompactor) write(dest string, outBlocks []shardedBlock, blocks .
 		if err != nil {
 			return errors.Wrap(err, "open chunk writer")
 		}
+		chunkw = newPreventDoubleCloseChunkWriter(chunkw) // We now close chunkWriter in populateBlock, but keep it in the closers here as well.
 
 		closers = append(closers, chunkw)
 
@@ -661,10 +683,12 @@ func (c *LeveledCompactor) write(dest string, outBlocks []shardedBlock, blocks .
 
 		outBlocks[ix].chunkw = chunkw
 
-		indexw, err := index.NewWriter(c.ctx, filepath.Join(tmp, indexFilename))
+		var indexw IndexWriter
+		indexw, err = index.NewWriter(c.ctx, filepath.Join(tmp, indexFilename))
 		if err != nil {
 			return errors.Wrap(err, "open index writer")
 		}
+		indexw = newPreventDoubleCloseIndexWriter(indexw) // We now close indexWriter in populateBlock, but keep it in the closers here as well.
 		closers = append(closers, indexw)
 
 		outBlocks[ix].indexw = indexw
@@ -904,10 +928,14 @@ func (c *LeveledCompactor) populateBlock(blocks []BlockReader, minT, maxT int64,
 		}
 	}
 
-	var (
-		refs = make([]storage.SeriesRef, len(outBlocks))
-		chks []chunks.Meta
-	)
+	// Semaphore for number of blocks that can be closed at once.
+	sema := semaphore.NewWeighted(int64(c.concurrencyOpts.MaxClosingBlocks))
+
+	blockWriters := make([]*asyncBlockWriter, len(outBlocks))
+	for ix := range outBlocks {
+		blockWriters[ix] = newAsyncBlockWriter(c.chunkPool, outBlocks[ix].chunkw, outBlocks[ix].indexw, sema)
+		defer blockWriters[ix].closeAsync() // Make sure to close writer to stop goroutine.
+	}
 
 	set := sets[0]
 	if len(sets) > 1 {
@@ -926,7 +954,7 @@ func (c *LeveledCompactor) populateBlock(blocks []BlockReader, minT, maxT int64,
 		s := set.At()
 
 		chksIter := s.Iterator()
-		chks = chks[:0]
+		var chks []chunks.Meta
 		for chksIter.Next() {
 			// We are not iterating in streaming way over chunk as it's more efficient to do bulk write for index and
 			// chunk file purposes.
@@ -948,28 +976,26 @@ func (c *LeveledCompactor) populateBlock(blocks []BlockReader, minT, maxT int64,
 			obIx = s.Labels().Hash() % uint64(len(outBlocks))
 		}
 
-		if err := outBlocks[obIx].chunkw.WriteChunks(chks...); err != nil {
-			return errors.Wrap(err, "write chunks")
+		err := blockWriters[obIx].addSeries(s.Labels(), chks)
+		if err != nil {
+			return errors.Wrap(err, "adding series")
 		}
-		if err := outBlocks[obIx].indexw.AddSeries(refs[obIx], s.Labels(), chks...); err != nil {
-			return errors.Wrap(err, "add series")
 	}
-
-		outBlocks[obIx].meta.Stats.NumChunks += uint64(len(chks))
-		outBlocks[obIx].meta.Stats.NumSeries++
-		for _, chk := range chks {
-			outBlocks[obIx].meta.Stats.NumSamples += uint64(chk.Chunk.NumSamples())
+	if set.Err() != nil {
+		return errors.Wrap(set.Err(), "iterate compaction set")
 	}
 
-		for _, chk := range chks {
-			if err := c.chunkPool.Put(chk.Chunk); err != nil {
-				return errors.Wrap(err, "put chunk")
+	for ix := range blockWriters {
+		blockWriters[ix].closeAsync()
 	}
+
+	for ix := range blockWriters {
+		stats, err := blockWriters[ix].waitFinished()
+		if err != nil {
+			return errors.Wrap(err, "writing block")
 		}
-		refs[obIx]++
-	}
-	if set.Err() != nil {
-		return errors.Wrap(set.Err(), "iterate compaction set")
+
+		outBlocks[ix].meta.Stats = stats
 	}
 
 	return nil
@@ -986,9 +1012,12 @@ func (c *LeveledCompactor) populateSymbols(sets []storage.ChunkSeriesSet, outBlo
 		return errors.New("no output block")
 	}
 
+	flushers := newSymbolFlushers(c.concurrencyOpts.SymbolsFlushersCount)
+	defer flushers.close() // Make sure to stop flushers before exiting to avoid leaking goroutines.
+
 	batchers := make([]*symbolsBatcher, len(outBlocks))
 	for ix := range outBlocks {
-		batchers[ix] = newSymbolsBatcher(inMemorySymbolsLimit, outBlocks[ix].tmpDir)
+		batchers[ix] = newSymbolsBatcher(inMemorySymbolsLimit, outBlocks[ix].tmpDir, flushers)
 
 		// Always include empty symbol. Blocks created from Head always have it in the symbols table,
 		// and if we only include symbols from series, we would skip it.
@@ -1023,16 +1052,25 @@ func (c *LeveledCompactor) populateSymbols(sets []storage.ChunkSeriesSet, outBlo
 	}
 
 	for ix := range outBlocks {
-		if err := c.ctx.Err(); err != nil {
-			return err
-		}
-
 		// Flush the batcher to write remaining symbols.
 		if err := batchers[ix].flushSymbols(true); err != nil {
 			return errors.Wrap(err, "flushing batcher")
 		}
+	}
+
+	err := flushers.close()
+	if err != nil {
+		return errors.Wrap(err, "closing flushers")
+	}
+
+	for ix := range outBlocks {
+		if err := c.ctx.Err(); err != nil {
+			return err
+		}
+
+		symbolFiles := batchers[ix].getSymbolFiles()
 
-		it, err := newSymbolsIterator(batchers[ix].symbolFiles())
+		it, err := newSymbolsIterator(symbolFiles)
 		if err != nil {
 			return errors.Wrap(err, "opening symbols iterator")
 		}
@@ -1064,7 +1102,7 @@ func (c *LeveledCompactor) populateSymbols(sets []storage.ChunkSeriesSet, outBlo
 
 		// Delete symbol files from symbolsBatcher. We don't need to perform the cleanup if populateSymbols
 		// or compaction fails, because in that case compactor already removes entire (temp) output block directory.
-		for _, fn := range batchers[ix].symbolFiles() {
+		for _, fn := range symbolFiles {
 			if err := os.Remove(fn); err != nil {
 				return errors.Wrap(err, "deleting symbols file")
 			}

tsdb/symbols_batch.go

@@ -8,12 +8,120 @@ import (
 	"os"
 	"path/filepath"
 	"sort"
+	"sync"
 
 	"github.com/golang/snappy"
 
 	"github.com/prometheus/prometheus/tsdb/errors"
 )
 
+// symbolFlushers writes symbols to provided files in background goroutines.
+type symbolFlushers struct {
+	jobs chan flusherJob
+	wg   sync.WaitGroup
+
+	closed bool
+
+	errMu sync.Mutex
+	err   error
+
+	pool *sync.Pool
+}
+
+func newSymbolFlushers(concurrency int) *symbolFlushers {
+	f := &symbolFlushers{
+		jobs: make(chan flusherJob),
+		pool: &sync.Pool{},
+	}
+
+	for i := 0; i < concurrency; i++ {
+		f.wg.Add(1)
+		go f.loop()
+	}
+
+	return f
+}
+
+func (f *symbolFlushers) flushSymbols(outputFile string, symbols map[string]struct{}) error {
+	if len(symbols) == 0 {
+		return fmt.Errorf("no symbols")
+	}
+
+	f.errMu.Lock()
+	err := f.err
+	f.errMu.Unlock()
+
+	// If there was any error previously, return it.
+	if err != nil {
+		return err
+	}
+
+	f.jobs <- flusherJob{
+		outputFile: outputFile,
+		symbols:    symbols,
+	}
+	return nil
+}
+
+func (f *symbolFlushers) loop() {
+	defer f.wg.Done()
+
+	for j := range f.jobs {
+		var sortedSymbols []string
+
+		pooled := f.pool.Get()
+		if pooled == nil {
+			sortedSymbols = make([]string, 0, len(j.symbols))
+		} else {
+			sortedSymbols = pooled.([]string)
+			sortedSymbols = sortedSymbols[:0]
+		}
+
+		for s := range j.symbols {
+			sortedSymbols = append(sortedSymbols, s)
+		}
+		sort.Strings(sortedSymbols)
+
+		err := writeSymbolsToFile(j.outputFile, sortedSymbols)
+		sortedSymbols = sortedSymbols[:0]
+
+		//nolint:staticcheck // Ignore SA6002 safe to ignore and actually fixing it has some performance penalty.
+		f.pool.Put(sortedSymbols)
+
+		if err != nil {
+			f.errMu.Lock()
+			if f.err == nil {
+				f.err = err
+			}
+			f.errMu.Unlock()
+
+			break
+		}
+	}
+
+	for range f.jobs {
+		// drain the channel, don't do more flushing. only used when error occurs.
+	}
+}
+
+// Stops and waits until all flusher goroutines are finished.
+func (f *symbolFlushers) close() error {
+	if f.closed {
+		return f.err
+	}
+
+	f.closed = true
+	close(f.jobs)
+	f.wg.Wait()
+
+	return f.err
+}
+
+type flusherJob struct {
+	outputFile string
+	symbols    map[string]struct{}
+}
+
 // symbolsBatcher keeps buffer of symbols in memory. Once the buffer reaches the size limit (number of symbols),
 // batcher writes currently buffered symbols to file. At the end remaining symbols must be flushed. After writing
 // all batches, symbolsBatcher has list of files that can be used together with newSymbolsIterator to iterate
@@ -22,15 +130,18 @@ type symbolsBatcher struct {
 	dir   string
 	limit int
 
+	symbolsFiles []string // paths of symbol files, which were sent to flushers for flushing
+
 	buffer   map[string]struct{} // using map to deduplicate
-	symbolsFiles []string            // paths of symbol files that have been successfully written.
+	flushers *symbolFlushers
 }
 
-func newSymbolsBatcher(limit int, dir string) *symbolsBatcher {
+func newSymbolsBatcher(limit int, dir string, flushers *symbolFlushers) *symbolsBatcher {
 	return &symbolsBatcher{
 		limit:    limit,
 		dir:      dir,
 		buffer:   make(map[string]struct{}, limit),
+		flushers: flushers,
 	}
 }
 
@@ -44,23 +155,21 @@ func (sw *symbolsBatcher) flushSymbols(force bool) error {
 		return nil
 	}
 
-	sortedSymbols := make([]string, 0, len(sw.buffer))
-	for s := range sw.buffer {
-		sortedSymbols = append(sortedSymbols, s)
+	if len(sw.buffer) == 0 {
+		return nil
 	}
-	sort.Strings(sortedSymbols)
 
 	symbolsFile := filepath.Join(sw.dir, fmt.Sprintf("symbols_%d", len(sw.symbolsFiles)))
-	err := writeSymbolsToFile(symbolsFile, sortedSymbols)
-	if err == nil {
-		sw.buffer = make(map[string]struct{}, sw.limit)
 	sw.symbolsFiles = append(sw.symbolsFiles, symbolsFile)
-	}
 
-	return err
+	buf := sw.buffer
+	sw.buffer = make(map[string]struct{}, sw.limit)
+	return sw.flushers.flushSymbols(symbolsFile, buf)
 }
 
-func (sw *symbolsBatcher) symbolFiles() []string {
+// getSymbolFiles returns list of symbol files used to flush symbols to. These files are only valid if flushers
+// finish successfully.
+func (sw *symbolsBatcher) getSymbolFiles() []string {
 	return sw.symbolsFiles
 }
 

tsdb/symbols_batch_test.go

@@ -8,14 +8,25 @@ import (
 	"github.com/stretchr/testify/require"
 )
 
-func TestSymbolsBatchAndIteration(t *testing.T) {
+func TestSymbolsBatchAndIteration1(t *testing.T) {
+	testSymbolsBatchAndIterationWithFlushersConcurrency(t, 1)
+}
+
+func TestSymbolsBatchAndIteration5(t *testing.T) {
+	testSymbolsBatchAndIterationWithFlushersConcurrency(t, 5)
+}
+
+func testSymbolsBatchAndIterationWithFlushersConcurrency(t *testing.T, flushersConcurrency int) {
+	flushers := newSymbolFlushers(flushersConcurrency)
+	defer func() { _ = flushers.close() }()
+
 	dir := t.TempDir()
 
-	b := newSymbolsBatcher(100, dir)
+	b := newSymbolsBatcher(100, dir, flushers)
 
 	allWords := map[string]struct{}{}
 
-	for i := 0; i < 10; i++ {
+	for i := 0; i < 10*flushersConcurrency; i++ {
 		require.NoError(t, b.addSymbol(""))
 		allWords[""] = struct{}{}
 
@@ -29,8 +40,12 @@ func TestSymbolsBatchAndIteration(t *testing.T) {
 	}
 
 	require.NoError(t, b.flushSymbols(true))
+	require.NoError(t, b.flushSymbols(true)) // call again, this should do nothing, and not create new empty file.
+	require.NoError(t, flushers.close())
+
+	symbols := b.getSymbolFiles()
 
-	it, err := newSymbolsIterator(b.symbolFiles())
+	it, err := newSymbolsIterator(symbols)
 	require.NoError(t, err)
 	t.Cleanup(func() {
 		require.NoError(t, it.Close())