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1048 lines
27 KiB
1048 lines
27 KiB
// Copyright 2017 The Prometheus Authors |
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// Licensed under the Apache License, Version 2.0 (the "License"); |
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// you may not use this file except in compliance with the License. |
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// You may obtain a copy of the License at |
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// |
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// http://www.apache.org/licenses/LICENSE-2.0 |
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// |
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// Unless required by applicable law or agreed to in writing, software |
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// distributed under the License is distributed on an "AS IS" BASIS, |
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
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// See the License for the specific language governing permissions and |
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// limitations under the License. |
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|
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package tsdb |
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|
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import ( |
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"context" |
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"crypto/rand" |
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"fmt" |
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"io" |
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"math" |
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"os" |
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"path/filepath" |
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"sort" |
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"time" |
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|
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"github.com/go-kit/kit/log" |
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"github.com/go-kit/kit/log/level" |
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"github.com/oklog/ulid" |
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"github.com/pkg/errors" |
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"github.com/prometheus/client_golang/prometheus" |
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"github.com/prometheus/prometheus/pkg/labels" |
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"github.com/prometheus/prometheus/storage" |
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"github.com/prometheus/prometheus/tsdb/chunkenc" |
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"github.com/prometheus/prometheus/tsdb/chunks" |
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tsdb_errors "github.com/prometheus/prometheus/tsdb/errors" |
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"github.com/prometheus/prometheus/tsdb/fileutil" |
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"github.com/prometheus/prometheus/tsdb/index" |
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"github.com/prometheus/prometheus/tsdb/tombstones" |
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) |
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|
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// ExponentialBlockRanges returns the time ranges based on the stepSize. |
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func ExponentialBlockRanges(minSize int64, steps, stepSize int) []int64 { |
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ranges := make([]int64, 0, steps) |
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curRange := minSize |
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for i := 0; i < steps; i++ { |
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ranges = append(ranges, curRange) |
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curRange = curRange * int64(stepSize) |
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} |
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|
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return ranges |
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} |
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|
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// Compactor provides compaction against an underlying storage |
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// of time series data. |
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type Compactor interface { |
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// Plan returns a set of directories that can be compacted concurrently. |
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// The directories can be overlapping. |
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// Results returned when compactions are in progress are undefined. |
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Plan(dir string) ([]string, error) |
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|
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// Write persists a Block into a directory. |
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// No Block is written when resulting Block has 0 samples, and returns empty ulid.ULID{}. |
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Write(dest string, b BlockReader, mint, maxt int64, parent *BlockMeta) (ulid.ULID, error) |
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|
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// Compact runs compaction against the provided directories. Must |
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// only be called concurrently with results of Plan(). |
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// Can optionally pass a list of already open blocks, |
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// to avoid having to reopen them. |
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// When resulting Block has 0 samples |
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// * No block is written. |
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// * The source dirs are marked Deletable. |
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// * Returns empty ulid.ULID{}. |
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Compact(dest string, dirs []string, open []*Block) (ulid.ULID, error) |
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} |
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// LeveledCompactor implements the Compactor interface. |
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type LeveledCompactor struct { |
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metrics *compactorMetrics |
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logger log.Logger |
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ranges []int64 |
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chunkPool chunkenc.Pool |
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ctx context.Context |
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} |
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type compactorMetrics struct { |
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ran prometheus.Counter |
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populatingBlocks prometheus.Gauge |
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overlappingBlocks prometheus.Counter |
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duration prometheus.Histogram |
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chunkSize prometheus.Histogram |
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chunkSamples prometheus.Histogram |
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chunkRange prometheus.Histogram |
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} |
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func newCompactorMetrics(r prometheus.Registerer) *compactorMetrics { |
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m := &compactorMetrics{} |
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|
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m.ran = prometheus.NewCounter(prometheus.CounterOpts{ |
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Name: "prometheus_tsdb_compactions_total", |
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Help: "Total number of compactions that were executed for the partition.", |
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}) |
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m.populatingBlocks = prometheus.NewGauge(prometheus.GaugeOpts{ |
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Name: "prometheus_tsdb_compaction_populating_block", |
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Help: "Set to 1 when a block is currently being written to the disk.", |
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}) |
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m.overlappingBlocks = prometheus.NewCounter(prometheus.CounterOpts{ |
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Name: "prometheus_tsdb_vertical_compactions_total", |
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Help: "Total number of compactions done on overlapping blocks.", |
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}) |
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m.duration = prometheus.NewHistogram(prometheus.HistogramOpts{ |
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Name: "prometheus_tsdb_compaction_duration_seconds", |
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Help: "Duration of compaction runs", |
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Buckets: prometheus.ExponentialBuckets(1, 2, 10), |
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}) |
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m.chunkSize = prometheus.NewHistogram(prometheus.HistogramOpts{ |
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Name: "prometheus_tsdb_compaction_chunk_size_bytes", |
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Help: "Final size of chunks on their first compaction", |
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Buckets: prometheus.ExponentialBuckets(32, 1.5, 12), |
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}) |
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m.chunkSamples = prometheus.NewHistogram(prometheus.HistogramOpts{ |
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Name: "prometheus_tsdb_compaction_chunk_samples", |
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Help: "Final number of samples on their first compaction", |
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Buckets: prometheus.ExponentialBuckets(4, 1.5, 12), |
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}) |
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m.chunkRange = prometheus.NewHistogram(prometheus.HistogramOpts{ |
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Name: "prometheus_tsdb_compaction_chunk_range_seconds", |
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Help: "Final time range of chunks on their first compaction", |
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Buckets: prometheus.ExponentialBuckets(100, 4, 10), |
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}) |
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if r != nil { |
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r.MustRegister( |
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m.ran, |
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m.populatingBlocks, |
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m.overlappingBlocks, |
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m.duration, |
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m.chunkRange, |
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m.chunkSamples, |
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m.chunkSize, |
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) |
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} |
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return m |
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} |
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// NewLeveledCompactor returns a LeveledCompactor. |
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func NewLeveledCompactor(ctx context.Context, r prometheus.Registerer, l log.Logger, ranges []int64, pool chunkenc.Pool) (*LeveledCompactor, error) { |
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if len(ranges) == 0 { |
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return nil, errors.Errorf("at least one range must be provided") |
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} |
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if pool == nil { |
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pool = chunkenc.NewPool() |
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} |
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if l == nil { |
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l = log.NewNopLogger() |
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} |
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return &LeveledCompactor{ |
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ranges: ranges, |
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chunkPool: pool, |
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logger: l, |
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metrics: newCompactorMetrics(r), |
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ctx: ctx, |
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}, nil |
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} |
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|
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type dirMeta struct { |
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dir string |
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meta *BlockMeta |
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} |
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|
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// Plan returns a list of compactable blocks in the provided directory. |
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func (c *LeveledCompactor) Plan(dir string) ([]string, error) { |
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dirs, err := blockDirs(dir) |
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if err != nil { |
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return nil, err |
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} |
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if len(dirs) < 1 { |
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return nil, nil |
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} |
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var dms []dirMeta |
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for _, dir := range dirs { |
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meta, _, err := readMetaFile(dir) |
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if err != nil { |
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return nil, err |
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} |
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dms = append(dms, dirMeta{dir, meta}) |
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} |
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return c.plan(dms) |
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} |
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func (c *LeveledCompactor) plan(dms []dirMeta) ([]string, error) { |
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sort.Slice(dms, func(i, j int) bool { |
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return dms[i].meta.MinTime < dms[j].meta.MinTime |
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}) |
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res := c.selectOverlappingDirs(dms) |
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if len(res) > 0 { |
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return res, nil |
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} |
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// No overlapping blocks, do compaction the usual way. |
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// We do not include a recently created block with max(minTime), so the block which was just created from WAL. |
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// This gives users a window of a full block size to piece-wise backup new data without having to care about data overlap. |
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dms = dms[:len(dms)-1] |
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|
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for _, dm := range c.selectDirs(dms) { |
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res = append(res, dm.dir) |
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} |
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if len(res) > 0 { |
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return res, nil |
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} |
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// Compact any blocks with big enough time range that have >5% tombstones. |
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for i := len(dms) - 1; i >= 0; i-- { |
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meta := dms[i].meta |
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if meta.MaxTime-meta.MinTime < c.ranges[len(c.ranges)/2] { |
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break |
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} |
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if float64(meta.Stats.NumTombstones)/float64(meta.Stats.NumSeries+1) > 0.05 { |
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return []string{dms[i].dir}, nil |
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} |
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} |
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return nil, nil |
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} |
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// selectDirs returns the dir metas that should be compacted into a single new block. |
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// If only a single block range is configured, the result is always nil. |
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func (c *LeveledCompactor) selectDirs(ds []dirMeta) []dirMeta { |
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if len(c.ranges) < 2 || len(ds) < 1 { |
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return nil |
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} |
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highTime := ds[len(ds)-1].meta.MinTime |
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for _, iv := range c.ranges[1:] { |
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parts := splitByRange(ds, iv) |
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if len(parts) == 0 { |
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continue |
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} |
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Outer: |
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for _, p := range parts { |
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// Do not select the range if it has a block whose compaction failed. |
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for _, dm := range p { |
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if dm.meta.Compaction.Failed { |
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continue Outer |
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} |
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} |
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mint := p[0].meta.MinTime |
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maxt := p[len(p)-1].meta.MaxTime |
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// Pick the range of blocks if it spans the full range (potentially with gaps) |
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// or is before the most recent block. |
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// This ensures we don't compact blocks prematurely when another one of the same |
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// size still fits in the range. |
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if (maxt-mint == iv || maxt <= highTime) && len(p) > 1 { |
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return p |
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} |
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} |
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} |
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return nil |
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} |
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// selectOverlappingDirs returns all dirs with overlapping time ranges. |
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// It expects sorted input by mint and returns the overlapping dirs in the same order as received. |
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func (c *LeveledCompactor) selectOverlappingDirs(ds []dirMeta) []string { |
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if len(ds) < 2 { |
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return nil |
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} |
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var overlappingDirs []string |
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globalMaxt := ds[0].meta.MaxTime |
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for i, d := range ds[1:] { |
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if d.meta.MinTime < globalMaxt { |
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if len(overlappingDirs) == 0 { // When it is the first overlap, need to add the last one as well. |
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overlappingDirs = append(overlappingDirs, ds[i].dir) |
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} |
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overlappingDirs = append(overlappingDirs, d.dir) |
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} else if len(overlappingDirs) > 0 { |
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break |
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} |
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if d.meta.MaxTime > globalMaxt { |
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globalMaxt = d.meta.MaxTime |
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} |
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} |
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return overlappingDirs |
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} |
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|
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// splitByRange splits the directories by the time range. The range sequence starts at 0. |
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// |
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// For example, if we have blocks [0-10, 10-20, 50-60, 90-100] and the split range tr is 30 |
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// it returns [0-10, 10-20], [50-60], [90-100]. |
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func splitByRange(ds []dirMeta, tr int64) [][]dirMeta { |
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var splitDirs [][]dirMeta |
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|
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for i := 0; i < len(ds); { |
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var ( |
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group []dirMeta |
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t0 int64 |
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m = ds[i].meta |
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) |
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// Compute start of aligned time range of size tr closest to the current block's start. |
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if m.MinTime >= 0 { |
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t0 = tr * (m.MinTime / tr) |
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} else { |
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t0 = tr * ((m.MinTime - tr + 1) / tr) |
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} |
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// Skip blocks that don't fall into the range. This can happen via mis-alignment or |
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// by being the multiple of the intended range. |
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if m.MaxTime > t0+tr { |
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i++ |
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continue |
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} |
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|
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// Add all dirs to the current group that are within [t0, t0+tr]. |
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for ; i < len(ds); i++ { |
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// Either the block falls into the next range or doesn't fit at all (checked above). |
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if ds[i].meta.MaxTime > t0+tr { |
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break |
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} |
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group = append(group, ds[i]) |
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} |
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|
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if len(group) > 0 { |
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splitDirs = append(splitDirs, group) |
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} |
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} |
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return splitDirs |
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} |
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func compactBlockMetas(uid ulid.ULID, blocks ...*BlockMeta) *BlockMeta { |
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res := &BlockMeta{ |
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ULID: uid, |
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MinTime: blocks[0].MinTime, |
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} |
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|
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sources := map[ulid.ULID]struct{}{} |
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// For overlapping blocks, the Maxt can be |
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// in any block so we track it globally. |
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maxt := int64(math.MinInt64) |
|
|
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for _, b := range blocks { |
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if b.MaxTime > maxt { |
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maxt = b.MaxTime |
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} |
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if b.Compaction.Level > res.Compaction.Level { |
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res.Compaction.Level = b.Compaction.Level |
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} |
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for _, s := range b.Compaction.Sources { |
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sources[s] = struct{}{} |
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} |
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res.Compaction.Parents = append(res.Compaction.Parents, BlockDesc{ |
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ULID: b.ULID, |
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MinTime: b.MinTime, |
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MaxTime: b.MaxTime, |
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}) |
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} |
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res.Compaction.Level++ |
|
|
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for s := range sources { |
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res.Compaction.Sources = append(res.Compaction.Sources, s) |
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} |
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sort.Slice(res.Compaction.Sources, func(i, j int) bool { |
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return res.Compaction.Sources[i].Compare(res.Compaction.Sources[j]) < 0 |
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}) |
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|
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res.MaxTime = maxt |
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return res |
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} |
|
|
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// Compact creates a new block in the compactor's directory from the blocks in the |
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// provided directories. |
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func (c *LeveledCompactor) Compact(dest string, dirs []string, open []*Block) (uid ulid.ULID, err error) { |
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var ( |
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blocks []BlockReader |
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bs []*Block |
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metas []*BlockMeta |
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uids []string |
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) |
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start := time.Now() |
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|
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for _, d := range dirs { |
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meta, _, err := readMetaFile(d) |
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if err != nil { |
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return uid, err |
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} |
|
|
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var b *Block |
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|
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// Use already open blocks if we can, to avoid |
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// having the index data in memory twice. |
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for _, o := range open { |
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if meta.ULID == o.Meta().ULID { |
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b = o |
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break |
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} |
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} |
|
|
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if b == nil { |
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var err error |
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b, err = OpenBlock(c.logger, d, c.chunkPool) |
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if err != nil { |
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return uid, err |
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} |
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defer b.Close() |
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} |
|
|
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metas = append(metas, meta) |
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blocks = append(blocks, b) |
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bs = append(bs, b) |
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uids = append(uids, meta.ULID.String()) |
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} |
|
|
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uid = ulid.MustNew(ulid.Now(), rand.Reader) |
|
|
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meta := compactBlockMetas(uid, metas...) |
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err = c.write(dest, meta, blocks...) |
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if err == nil { |
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if meta.Stats.NumSamples == 0 { |
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for _, b := range bs { |
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b.meta.Compaction.Deletable = true |
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n, err := writeMetaFile(c.logger, b.dir, &b.meta) |
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if err != nil { |
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level.Error(c.logger).Log( |
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"msg", "Failed to write 'Deletable' to meta file after compaction", |
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"ulid", b.meta.ULID, |
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) |
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} |
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b.numBytesMeta = n |
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} |
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uid = ulid.ULID{} |
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level.Info(c.logger).Log( |
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"msg", "compact blocks resulted in empty block", |
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"count", len(blocks), |
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"sources", fmt.Sprintf("%v", uids), |
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"duration", time.Since(start), |
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) |
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} else { |
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level.Info(c.logger).Log( |
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"msg", "compact blocks", |
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"count", len(blocks), |
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"mint", meta.MinTime, |
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"maxt", meta.MaxTime, |
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"ulid", meta.ULID, |
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"sources", fmt.Sprintf("%v", uids), |
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"duration", time.Since(start), |
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) |
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} |
|
return uid, nil |
|
} |
|
|
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var merr tsdb_errors.MultiError |
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merr.Add(err) |
|
if err != context.Canceled { |
|
for _, b := range bs { |
|
if err := b.setCompactionFailed(); err != nil { |
|
merr.Add(errors.Wrapf(err, "setting compaction failed for block: %s", b.Dir())) |
|
} |
|
} |
|
} |
|
|
|
return uid, merr |
|
} |
|
|
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func (c *LeveledCompactor) Write(dest string, b BlockReader, mint, maxt int64, parent *BlockMeta) (ulid.ULID, error) { |
|
start := time.Now() |
|
|
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uid := ulid.MustNew(ulid.Now(), rand.Reader) |
|
|
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meta := &BlockMeta{ |
|
ULID: uid, |
|
MinTime: mint, |
|
MaxTime: maxt, |
|
} |
|
meta.Compaction.Level = 1 |
|
meta.Compaction.Sources = []ulid.ULID{uid} |
|
|
|
if parent != nil { |
|
meta.Compaction.Parents = []BlockDesc{ |
|
{ULID: parent.ULID, MinTime: parent.MinTime, MaxTime: parent.MaxTime}, |
|
} |
|
} |
|
|
|
err := c.write(dest, meta, b) |
|
if err != nil { |
|
return uid, err |
|
} |
|
|
|
if meta.Stats.NumSamples == 0 { |
|
return ulid.ULID{}, nil |
|
} |
|
|
|
level.Info(c.logger).Log( |
|
"msg", "write block", |
|
"mint", meta.MinTime, |
|
"maxt", meta.MaxTime, |
|
"ulid", meta.ULID, |
|
"duration", time.Since(start), |
|
) |
|
return uid, nil |
|
} |
|
|
|
// instrumentedChunkWriter is used for level 1 compactions to record statistics |
|
// about compacted chunks. |
|
type instrumentedChunkWriter struct { |
|
ChunkWriter |
|
|
|
size prometheus.Histogram |
|
samples prometheus.Histogram |
|
trange prometheus.Histogram |
|
} |
|
|
|
func (w *instrumentedChunkWriter) WriteChunks(chunks ...chunks.Meta) error { |
|
for _, c := range chunks { |
|
w.size.Observe(float64(len(c.Chunk.Bytes()))) |
|
w.samples.Observe(float64(c.Chunk.NumSamples())) |
|
w.trange.Observe(float64(c.MaxTime - c.MinTime)) |
|
} |
|
return w.ChunkWriter.WriteChunks(chunks...) |
|
} |
|
|
|
// write creates a new block that is the union of the provided blocks into dir. |
|
// It cleans up all files of the old blocks after completing successfully. |
|
func (c *LeveledCompactor) write(dest string, meta *BlockMeta, blocks ...BlockReader) (err error) { |
|
dir := filepath.Join(dest, meta.ULID.String()) |
|
tmp := dir + ".tmp" |
|
var closers []io.Closer |
|
defer func(t time.Time) { |
|
var merr tsdb_errors.MultiError |
|
merr.Add(err) |
|
merr.Add(closeAll(closers)) |
|
err = merr.Err() |
|
|
|
// RemoveAll returns no error when tmp doesn't exist so it is safe to always run it. |
|
if err := os.RemoveAll(tmp); err != nil { |
|
level.Error(c.logger).Log("msg", "removed tmp folder after failed compaction", "err", err.Error()) |
|
} |
|
c.metrics.ran.Inc() |
|
c.metrics.duration.Observe(time.Since(t).Seconds()) |
|
}(time.Now()) |
|
|
|
if err = os.RemoveAll(tmp); err != nil { |
|
return err |
|
} |
|
|
|
if err = os.MkdirAll(tmp, 0777); err != nil { |
|
return err |
|
} |
|
|
|
// Populate chunk and index files into temporary directory with |
|
// data of all blocks. |
|
var chunkw ChunkWriter |
|
|
|
chunkw, err = chunks.NewWriter(chunkDir(tmp)) |
|
if err != nil { |
|
return errors.Wrap(err, "open chunk writer") |
|
} |
|
closers = append(closers, chunkw) |
|
// Record written chunk sizes on level 1 compactions. |
|
if meta.Compaction.Level == 1 { |
|
chunkw = &instrumentedChunkWriter{ |
|
ChunkWriter: chunkw, |
|
size: c.metrics.chunkSize, |
|
samples: c.metrics.chunkSamples, |
|
trange: c.metrics.chunkRange, |
|
} |
|
} |
|
|
|
indexw, err := index.NewWriter(c.ctx, filepath.Join(tmp, indexFilename)) |
|
if err != nil { |
|
return errors.Wrap(err, "open index writer") |
|
} |
|
closers = append(closers, indexw) |
|
|
|
if err := c.populateBlock(blocks, meta, indexw, chunkw); err != nil { |
|
return errors.Wrap(err, "write compaction") |
|
} |
|
|
|
select { |
|
case <-c.ctx.Done(): |
|
return c.ctx.Err() |
|
default: |
|
} |
|
|
|
// We are explicitly closing them here to check for error even |
|
// though these are covered under defer. This is because in Windows, |
|
// you cannot delete these unless they are closed and the defer is to |
|
// make sure they are closed if the function exits due to an error above. |
|
var merr tsdb_errors.MultiError |
|
for _, w := range closers { |
|
merr.Add(w.Close()) |
|
} |
|
closers = closers[:0] // Avoid closing the writers twice in the defer. |
|
if merr.Err() != nil { |
|
return merr.Err() |
|
} |
|
|
|
// Populated block is empty, so exit early. |
|
if meta.Stats.NumSamples == 0 { |
|
return nil |
|
} |
|
|
|
if _, err = writeMetaFile(c.logger, tmp, meta); err != nil { |
|
return errors.Wrap(err, "write merged meta") |
|
} |
|
|
|
// Create an empty tombstones file. |
|
if _, err := tombstones.WriteFile(c.logger, tmp, tombstones.NewMemTombstones()); err != nil { |
|
return errors.Wrap(err, "write new tombstones file") |
|
} |
|
|
|
df, err := fileutil.OpenDir(tmp) |
|
if err != nil { |
|
return errors.Wrap(err, "open temporary block dir") |
|
} |
|
defer func() { |
|
if df != nil { |
|
df.Close() |
|
} |
|
}() |
|
|
|
if err := df.Sync(); err != nil { |
|
return errors.Wrap(err, "sync temporary dir file") |
|
} |
|
|
|
// Close temp dir before rename block dir (for windows platform). |
|
if err = df.Close(); err != nil { |
|
return errors.Wrap(err, "close temporary dir") |
|
} |
|
df = nil |
|
|
|
// Block successfully written, make visible and remove old ones. |
|
if err := fileutil.Replace(tmp, dir); err != nil { |
|
return errors.Wrap(err, "rename block dir") |
|
} |
|
|
|
return nil |
|
} |
|
|
|
// populateBlock fills the index and chunk writers with new data gathered as the union |
|
// of the provided blocks. It returns meta information for the new block. |
|
// It expects sorted blocks input by mint. |
|
func (c *LeveledCompactor) populateBlock(blocks []BlockReader, meta *BlockMeta, indexw IndexWriter, chunkw ChunkWriter) (err error) { |
|
if len(blocks) == 0 { |
|
return errors.New("cannot populate block from no readers") |
|
} |
|
|
|
var ( |
|
set storage.DeprecatedChunkSeriesSet |
|
symbols index.StringIter |
|
closers = []io.Closer{} |
|
overlapping bool |
|
) |
|
defer func() { |
|
var merr tsdb_errors.MultiError |
|
merr.Add(err) |
|
if cerr := closeAll(closers); cerr != nil { |
|
merr.Add(errors.Wrap(cerr, "close")) |
|
} |
|
err = merr.Err() |
|
c.metrics.populatingBlocks.Set(0) |
|
}() |
|
c.metrics.populatingBlocks.Set(1) |
|
|
|
globalMaxt := blocks[0].Meta().MaxTime |
|
for i, b := range blocks { |
|
select { |
|
case <-c.ctx.Done(): |
|
return c.ctx.Err() |
|
default: |
|
} |
|
|
|
if !overlapping { |
|
if i > 0 && b.Meta().MinTime < globalMaxt { |
|
c.metrics.overlappingBlocks.Inc() |
|
overlapping = true |
|
level.Warn(c.logger).Log("msg", "Found overlapping blocks during compaction", "ulid", meta.ULID) |
|
} |
|
if b.Meta().MaxTime > globalMaxt { |
|
globalMaxt = b.Meta().MaxTime |
|
} |
|
} |
|
|
|
indexr, err := b.Index() |
|
if err != nil { |
|
return errors.Wrapf(err, "open index reader for block %+v", b.Meta()) |
|
} |
|
closers = append(closers, indexr) |
|
|
|
chunkr, err := b.Chunks() |
|
if err != nil { |
|
return errors.Wrapf(err, "open chunk reader for block %+v", b.Meta()) |
|
} |
|
closers = append(closers, chunkr) |
|
|
|
tombsr, err := b.Tombstones() |
|
if err != nil { |
|
return errors.Wrapf(err, "open tombstone reader for block %+v", b.Meta()) |
|
} |
|
closers = append(closers, tombsr) |
|
|
|
k, v := index.AllPostingsKey() |
|
all, err := indexr.Postings(k, v) |
|
if err != nil { |
|
return err |
|
} |
|
all = indexr.SortedPostings(all) |
|
|
|
s := newCompactionSeriesSet(indexr, chunkr, tombsr, all) |
|
syms := indexr.Symbols() |
|
if i == 0 { |
|
set = s |
|
symbols = syms |
|
continue |
|
} |
|
set, err = newCompactionMerger(set, s) |
|
if err != nil { |
|
return err |
|
} |
|
symbols = newMergedStringIter(symbols, syms) |
|
} |
|
|
|
for symbols.Next() { |
|
if err := indexw.AddSymbol(symbols.At()); err != nil { |
|
return errors.Wrap(err, "add symbol") |
|
} |
|
} |
|
if symbols.Err() != nil { |
|
return errors.Wrap(symbols.Err(), "next symbol") |
|
} |
|
|
|
delIter := &deletedIterator{} |
|
ref := uint64(0) |
|
for set.Next() { |
|
select { |
|
case <-c.ctx.Done(): |
|
return c.ctx.Err() |
|
default: |
|
} |
|
|
|
lset, chks, dranges := set.At() // The chunks here are not fully deleted. |
|
if overlapping { |
|
// If blocks are overlapping, it is possible to have unsorted chunks. |
|
sort.Slice(chks, func(i, j int) bool { |
|
return chks[i].MinTime < chks[j].MinTime |
|
}) |
|
} |
|
|
|
// Skip the series with all deleted chunks. |
|
if len(chks) == 0 { |
|
continue |
|
} |
|
|
|
for i, chk := range chks { |
|
// Re-encode head chunks that are still open (being appended to) or |
|
// outside the compacted MaxTime range. |
|
// The chunk.Bytes() method is not safe for open chunks hence the re-encoding. |
|
// This happens when snapshotting the head block. |
|
// |
|
// Block time range is half-open: [meta.MinTime, meta.MaxTime) and |
|
// chunks are closed hence the chk.MaxTime >= meta.MaxTime check. |
|
// |
|
// TODO think how to avoid the typecasting to verify when it is head block. |
|
if _, isHeadChunk := chk.Chunk.(*safeChunk); isHeadChunk && chk.MaxTime >= meta.MaxTime { |
|
dranges = append(dranges, tombstones.Interval{Mint: meta.MaxTime, Maxt: math.MaxInt64}) |
|
|
|
} else |
|
// Sanity check for disk blocks. |
|
// chk.MaxTime == meta.MaxTime shouldn't happen as well, but will brake many users so not checking for that. |
|
if chk.MinTime < meta.MinTime || chk.MaxTime > meta.MaxTime { |
|
return errors.Errorf("found chunk with minTime: %d maxTime: %d outside of compacted minTime: %d maxTime: %d", |
|
chk.MinTime, chk.MaxTime, meta.MinTime, meta.MaxTime) |
|
} |
|
|
|
if len(dranges) > 0 { |
|
// Re-encode the chunk to not have deleted values. |
|
if !chk.OverlapsClosedInterval(dranges[0].Mint, dranges[len(dranges)-1].Maxt) { |
|
continue |
|
} |
|
newChunk := chunkenc.NewXORChunk() |
|
app, err := newChunk.Appender() |
|
if err != nil { |
|
return err |
|
} |
|
|
|
delIter.it = chk.Chunk.Iterator(delIter.it) |
|
delIter.intervals = dranges |
|
|
|
var ( |
|
t int64 |
|
v float64 |
|
) |
|
for delIter.Next() { |
|
t, v = delIter.At() |
|
app.Append(t, v) |
|
} |
|
if err := delIter.Err(); err != nil { |
|
return errors.Wrap(err, "iterate chunk while re-encoding") |
|
} |
|
|
|
chks[i].Chunk = newChunk |
|
chks[i].MaxTime = t |
|
} |
|
} |
|
|
|
mergedChks := chks |
|
if overlapping { |
|
mergedChks, err = chunks.MergeOverlappingChunks(chks) |
|
if err != nil { |
|
return errors.Wrap(err, "merge overlapping chunks") |
|
} |
|
} |
|
if err := chunkw.WriteChunks(mergedChks...); err != nil { |
|
return errors.Wrap(err, "write chunks") |
|
} |
|
|
|
if err := indexw.AddSeries(ref, lset, mergedChks...); err != nil { |
|
return errors.Wrap(err, "add series") |
|
} |
|
|
|
meta.Stats.NumChunks += uint64(len(mergedChks)) |
|
meta.Stats.NumSeries++ |
|
for _, chk := range mergedChks { |
|
meta.Stats.NumSamples += uint64(chk.Chunk.NumSamples()) |
|
} |
|
|
|
for _, chk := range mergedChks { |
|
if err := c.chunkPool.Put(chk.Chunk); err != nil { |
|
return errors.Wrap(err, "put chunk") |
|
} |
|
} |
|
|
|
ref++ |
|
} |
|
if set.Err() != nil { |
|
return errors.Wrap(set.Err(), "iterate compaction set") |
|
} |
|
|
|
return nil |
|
} |
|
|
|
type compactionSeriesSet struct { |
|
p index.Postings |
|
index IndexReader |
|
chunks ChunkReader |
|
tombstones tombstones.Reader |
|
|
|
l labels.Labels |
|
c []chunks.Meta |
|
intervals tombstones.Intervals |
|
err error |
|
} |
|
|
|
func newCompactionSeriesSet(i IndexReader, c ChunkReader, t tombstones.Reader, p index.Postings) *compactionSeriesSet { |
|
return &compactionSeriesSet{ |
|
index: i, |
|
chunks: c, |
|
tombstones: t, |
|
p: p, |
|
} |
|
} |
|
|
|
func (c *compactionSeriesSet) Next() bool { |
|
if !c.p.Next() { |
|
return false |
|
} |
|
var err error |
|
|
|
c.intervals, err = c.tombstones.Get(c.p.At()) |
|
if err != nil { |
|
c.err = errors.Wrap(err, "get tombstones") |
|
return false |
|
} |
|
|
|
if err = c.index.Series(c.p.At(), &c.l, &c.c); err != nil { |
|
c.err = errors.Wrapf(err, "get series %d", c.p.At()) |
|
return false |
|
} |
|
|
|
// Remove completely deleted chunks. |
|
if len(c.intervals) > 0 { |
|
chks := make([]chunks.Meta, 0, len(c.c)) |
|
for _, chk := range c.c { |
|
if !(tombstones.Interval{Mint: chk.MinTime, Maxt: chk.MaxTime}.IsSubrange(c.intervals)) { |
|
chks = append(chks, chk) |
|
} |
|
} |
|
|
|
c.c = chks |
|
} |
|
|
|
for i := range c.c { |
|
chk := &c.c[i] |
|
|
|
chk.Chunk, err = c.chunks.Chunk(chk.Ref) |
|
if err != nil { |
|
c.err = errors.Wrapf(err, "chunk %d not found", chk.Ref) |
|
return false |
|
} |
|
} |
|
|
|
return true |
|
} |
|
|
|
func (c *compactionSeriesSet) Err() error { |
|
if c.err != nil { |
|
return c.err |
|
} |
|
return c.p.Err() |
|
} |
|
|
|
func (c *compactionSeriesSet) At() (labels.Labels, []chunks.Meta, tombstones.Intervals) { |
|
return c.l, c.c, c.intervals |
|
} |
|
|
|
type compactionMerger struct { |
|
a, b storage.DeprecatedChunkSeriesSet |
|
|
|
aok, bok bool |
|
l labels.Labels |
|
c []chunks.Meta |
|
intervals tombstones.Intervals |
|
} |
|
|
|
// TODO(bwplotka): Move to storage mergers. |
|
func newCompactionMerger(a, b storage.DeprecatedChunkSeriesSet) (*compactionMerger, error) { |
|
c := &compactionMerger{ |
|
a: a, |
|
b: b, |
|
} |
|
// Initialize first elements of both sets as Next() needs |
|
// one element look-ahead. |
|
c.aok = c.a.Next() |
|
c.bok = c.b.Next() |
|
|
|
return c, c.Err() |
|
} |
|
|
|
func (c *compactionMerger) compare() int { |
|
if !c.aok { |
|
return 1 |
|
} |
|
if !c.bok { |
|
return -1 |
|
} |
|
a, _, _ := c.a.At() |
|
b, _, _ := c.b.At() |
|
return labels.Compare(a, b) |
|
} |
|
|
|
func (c *compactionMerger) Next() bool { |
|
if !c.aok && !c.bok || c.Err() != nil { |
|
return false |
|
} |
|
// While advancing child iterators the memory used for labels and chunks |
|
// may be reused. When picking a series we have to store the result. |
|
var lset labels.Labels |
|
var chks []chunks.Meta |
|
|
|
d := c.compare() |
|
if d > 0 { |
|
lset, chks, c.intervals = c.b.At() |
|
c.l = append(c.l[:0], lset...) |
|
c.c = append(c.c[:0], chks...) |
|
|
|
c.bok = c.b.Next() |
|
} else if d < 0 { |
|
lset, chks, c.intervals = c.a.At() |
|
c.l = append(c.l[:0], lset...) |
|
c.c = append(c.c[:0], chks...) |
|
|
|
c.aok = c.a.Next() |
|
} else { |
|
// Both sets contain the current series. Chain them into a single one. |
|
l, ca, ra := c.a.At() |
|
_, cb, rb := c.b.At() |
|
|
|
for _, r := range rb { |
|
ra = ra.Add(r) |
|
} |
|
|
|
c.l = append(c.l[:0], l...) |
|
c.c = append(append(c.c[:0], ca...), cb...) |
|
c.intervals = ra |
|
|
|
c.aok = c.a.Next() |
|
c.bok = c.b.Next() |
|
} |
|
|
|
return true |
|
} |
|
|
|
func (c *compactionMerger) Err() error { |
|
if c.a.Err() != nil { |
|
return c.a.Err() |
|
} |
|
return c.b.Err() |
|
} |
|
|
|
func (c *compactionMerger) At() (labels.Labels, []chunks.Meta, tombstones.Intervals) { |
|
return c.l, c.c, c.intervals |
|
} |
|
|
|
func newMergedStringIter(a index.StringIter, b index.StringIter) index.StringIter { |
|
return &mergedStringIter{a: a, b: b, aok: a.Next(), bok: b.Next()} |
|
} |
|
|
|
type mergedStringIter struct { |
|
a index.StringIter |
|
b index.StringIter |
|
aok, bok bool |
|
cur string |
|
} |
|
|
|
func (m *mergedStringIter) Next() bool { |
|
if (!m.aok && !m.bok) || (m.Err() != nil) { |
|
return false |
|
} |
|
|
|
if !m.aok { |
|
m.cur = m.b.At() |
|
m.bok = m.b.Next() |
|
} else if !m.bok { |
|
m.cur = m.a.At() |
|
m.aok = m.a.Next() |
|
} else if m.b.At() > m.a.At() { |
|
m.cur = m.a.At() |
|
m.aok = m.a.Next() |
|
} else if m.a.At() > m.b.At() { |
|
m.cur = m.b.At() |
|
m.bok = m.b.Next() |
|
} else { // Equal. |
|
m.cur = m.b.At() |
|
m.aok = m.a.Next() |
|
m.bok = m.b.Next() |
|
} |
|
|
|
return true |
|
} |
|
func (m mergedStringIter) At() string { return m.cur } |
|
func (m mergedStringIter) Err() error { |
|
if m.a.Err() != nil { |
|
return m.a.Err() |
|
} |
|
return m.b.Err() |
|
}
|
|
|