// Package tsdb implements a time series storage for float64 sample data. package tsdb import ( "bytes" "fmt" "io" "io/ioutil" "os" "path/filepath" "strconv" "strings" "sync" "sync/atomic" "time" "unsafe" "golang.org/x/sync/errgroup" "github.com/coreos/etcd/pkg/fileutil" "github.com/fabxc/tsdb/labels" "github.com/go-kit/kit/log" "github.com/nightlyone/lockfile" "github.com/pkg/errors" "github.com/prometheus/client_golang/prometheus" ) // DefaultOptions used for the DB. They are sane for setups using // millisecond precision timestampdb. var DefaultOptions = &Options{ WALFlushInterval: 5 * time.Second, RetentionDuration: 15 * 24 * 60 * 60 * 1000, // 15 days in milliseconds MinBlockDuration: 3 * 60 * 60 * 1000, // 2 hours in milliseconds MaxBlockDuration: 24 * 60 * 60 * 1000, // 1 days in milliseconds AppendableBlocks: 2, } // Options of the DB storage. type Options struct { // The interval at which the write ahead log is flushed to disc. WALFlushInterval time.Duration // Duration of persisted data to keep. RetentionDuration uint64 // The timestamp range of head blocks after which they get persisted. // It's the minimum duration of any persisted block. MinBlockDuration uint64 // The maximum timestamp range of compacted blocks. MaxBlockDuration uint64 // Number of head blocks that can be appended to. // Should be two or higher to prevent write errors in general scenarios. // // After a new block is started for timestamp t0 or higher, appends with // timestamps as early as t0 - (n-1) * MinBlockDuration are valid. AppendableBlocks int } // Appender allows appending a batch of data. It must be completed with a // call to Commit or Rollback and must not be reused afterwards. type Appender interface { // Add adds a sample pair for the given series. A reference number is // returned which can be used to add further samples in the same or later // transactions. // Returned reference numbers are ephemeral and may be rejected in calls // to AddFast() at any point. Adding the sample via Add() returns a new // reference number. Add(l labels.Labels, t int64, v float64) (uint64, error) // Add adds a sample pair for the referenced series. It is generally faster // than adding a sample by providing its full label set. AddFast(ref uint64, t int64, v float64) error // Commit submits the collected samples and purges the batch. Commit() error // Rollback rolls back all modifications made in the appender so far. Rollback() error } const sep = '\xff' // DB handles reads and writes of time series falling into // a hashed partition of a seriedb. type DB struct { dir string lockf lockfile.Lockfile logger log.Logger metrics *dbMetrics opts *Options // Mutex for that must be held when modifying the general // block layout. mtx sync.RWMutex persisted []*persistedBlock seqBlocks map[int]Block // Mutex that must be held when modifying just the head blocks // or the general layout. headmtx sync.RWMutex heads []*headBlock headGen uint8 compactor Compactor compactc chan struct{} donec chan struct{} stopc chan struct{} } type dbMetrics struct { samplesAppended prometheus.Counter compactionsTriggered prometheus.Counter } func newDBMetrics(r prometheus.Registerer) *dbMetrics { m := &dbMetrics{} m.samplesAppended = prometheus.NewCounter(prometheus.CounterOpts{ Name: "tsdb_samples_appended_total", Help: "Total number of appended sampledb.", }) m.compactionsTriggered = prometheus.NewCounter(prometheus.CounterOpts{ Name: "tsdb_compactions_triggered_total", Help: "Total number of triggered compactions for the partition.", }) if r != nil { r.MustRegister( m.samplesAppended, m.compactionsTriggered, ) } return m } // Open returns a new DB in the given directory. func Open(dir string, l log.Logger, r prometheus.Registerer, opts *Options) (db *DB, err error) { if err := os.MkdirAll(dir, 0777); err != nil { return nil, err } absdir, err := filepath.Abs(dir) if err != nil { return nil, err } lockf, err := lockfile.New(filepath.Join(absdir, "lock")) if err != nil { return nil, err } if err := lockf.TryLock(); err != nil { return nil, errors.Wrapf(err, "open DB in %s", dir) } if l == nil { l = log.NewLogfmtLogger(os.Stdout) l = log.NewContext(l).With("ts", log.DefaultTimestampUTC, "caller", log.DefaultCaller) } if opts == nil { opts = DefaultOptions } if opts.AppendableBlocks < 1 { return nil, errors.Errorf("AppendableBlocks must be greater than 0") } db = &DB{ dir: dir, lockf: lockf, logger: l, metrics: newDBMetrics(r), opts: opts, compactc: make(chan struct{}, 1), donec: make(chan struct{}), stopc: make(chan struct{}), } db.compactor = newCompactor(r, &compactorOptions{ maxBlockRange: opts.MaxBlockDuration, }) if err := db.reloadBlocks(); err != nil { return nil, err } go db.run() return db, nil } func (db *DB) run() { defer close(db.donec) tick := time.NewTicker(30 * time.Second) defer tick.Stop() for { select { case <-tick.C: select { case db.compactc <- struct{}{}: default: } case <-db.compactc: db.metrics.compactionsTriggered.Inc() var merr MultiError changes, err := db.compact() merr.Add(err) if changes { merr.Add(db.reloadBlocks()) } if err := merr.Err(); err != nil { db.logger.Log("msg", "compaction failed", "err", err) } case <-db.stopc: return } } } func (db *DB) compact() (changes bool, err error) { // Check whether we have pending head blocks that are ready to be persisted. // They have the highest priority. db.headmtx.RLock() var singles []*headBlock // Collect head blocks that are ready for compaction. Write them after // returning the lock to not block Appenders. // Selected blocks are semantically ensured to not be written to afterwards // by appendable(). if len(db.heads) > db.opts.AppendableBlocks { for _, h := range db.heads[:len(db.heads)-db.opts.AppendableBlocks] { // Blocks that won't be appendable when instantiating a new appender // might still have active appenders on them. // Abort at the first one we encounter. if atomic.LoadUint64(&h.activeWriters) > 0 { break } singles = append(singles, h) } } db.headmtx.RUnlock() Loop: for _, h := range singles { db.logger.Log("msg", "write head", "seq", h.Meta().Sequence) select { case <-db.stopc: break Loop default: } if err = db.compactor.Write(h.Dir(), h); err != nil { return changes, errors.Wrap(err, "persist head block") } changes = true } // Check for compactions of multiple blocks. for { plans, err := db.compactor.Plan(db.dir) if err != nil { return changes, errors.Wrap(err, "plan compaction") } select { case <-db.stopc: return false, nil default: } // We just execute compactions sequentially to not cause too extreme // CPU and memory spikes. // TODO(fabxc): return more descriptive plans in the future that allow // estimation of resource usage and conditional parallelization? for _, p := range plans { db.logger.Log("msg", "compact blocks", "seq", fmt.Sprintf("%v", p)) if err := db.compactor.Compact(p...); err != nil { return changes, errors.Wrapf(err, "compact %s", p) } changes = true } // If we didn't compact anything, there's nothing left to do. if len(plans) == 0 { break } } return changes, nil } // func (db *DB) retentionCutoff() error { // if db.opts.RetentionDuration == 0 { // return nil // } // h := db.heads[len(db.heads)-1] // t := h.meta.MinTime - int64(db.opts.RetentionDuration) // var ( // blocks = db.blocks() // i int // b Block // ) // for i, b = range blocks { // if b.Meta().MinTime >= t { // break // } // } // if i <= 1 { // return nil // } // db.logger.Log("msg", "retention cutoff", "idx", i-1) // db.removeBlocks(0, i) // for _, b := range blocks[:i] { // if err := os.RemoveAll(b.Dir()); err != nil { // return errors.Wrap(err, "removing old block") // } // } // return nil // } func (db *DB) reloadBlocks() error { db.mtx.Lock() defer db.mtx.Unlock() db.headmtx.Lock() defer db.headmtx.Unlock() dirs, err := blockDirs(db.dir) if err != nil { return errors.Wrap(err, "find blocks") } var ( metas []*BlockMeta persisted []*persistedBlock heads []*headBlock seqBlocks = make(map[int]Block, len(dirs)) ) for _, dir := range dirs { meta, err := readMetaFile(dir) if err != nil { return errors.Wrapf(err, "read meta information %s", dir) } metas = append(metas, meta) } for i, meta := range metas { b, ok := db.seqBlocks[meta.Sequence] if meta.Compaction.Generation == 0 { if ok && meta.ULID != b.Meta().ULID { return errors.Errorf("head block ULID changed unexpectedly") } heads = append(heads, b.(*headBlock)) } else { if ok && meta.ULID != b.Meta().ULID { if err := b.Close(); err != nil { return err } b, err = newPersistedBlock(dirs[i]) if err != nil { return errors.Wrapf(err, "open persisted block %s", dirs[i]) } } persisted = append(persisted, b.(*persistedBlock)) } seqBlocks[meta.Sequence] = b } for seq, b := range db.seqBlocks { if _, ok := seqBlocks[seq]; !ok { if err := b.Close(); err != nil { return errors.Wrapf(err, "closing removed block %d", b.Meta().Sequence) } } } db.seqBlocks = seqBlocks db.persisted = persisted db.heads = heads return nil } // Close the partition. func (db *DB) Close() error { close(db.stopc) <-db.donec // Lock mutex and leave it locked so we panic if there's a bug causing // the block to be used afterwards. db.mtx.Lock() var g errgroup.Group for _, pb := range db.persisted { g.Go(pb.Close) } for _, hb := range db.heads { g.Go(hb.Close) } var merr MultiError merr.Add(g.Wait()) merr.Add(db.lockf.Unlock()) return merr.Err() } // Appender returns a new Appender on the database. func (db *DB) Appender() Appender { db.mtx.RLock() a := &dbAppender{db: db} db.headmtx.RLock() for _, b := range db.appendable() { a.heads = append(a.heads, b.Appender().(*headAppender)) } db.headmtx.RUnlock() return a } type dbAppender struct { db *DB heads []*headAppender samples int } func (a *dbAppender) Add(lset labels.Labels, t int64, v float64) (uint64, error) { h, err := a.appenderFor(t) if err != nil { return 0, err } ref, err := h.Add(lset, t, v) if err != nil { return 0, err } a.samples++ return ref | (uint64(h.generation) << 40), nil } func (a *dbAppender) AddFast(ref uint64, t int64, v float64) error { // We store the head generation in the 4th byte and use it to reject // stale references. gen := uint8((ref << 16) >> 56) h, err := a.appenderFor(t) if err != nil { return err } // If the reference pointed into a previous block, we cannot // use it to append the sample. if h.generation != gen { return ErrNotFound } if err := h.AddFast(ref, t, v); err != nil { return err } a.samples++ return nil } // appenderFor gets the appender for the head containing timestamp t. // If the head block doesn't exist yet, it gets created. func (a *dbAppender) appenderFor(t int64) (*headAppender, error) { // If there's no fitting head block for t, ensure it gets created. if len(a.heads) == 0 || t >= a.heads[len(a.heads)-1].meta.MaxTime { a.db.headmtx.Lock() if err := a.db.ensureHead(t); err != nil { a.db.headmtx.Unlock() return nil, err } if len(a.heads) == 0 { for _, b := range a.db.appendable() { a.heads = append(a.heads, b.Appender().(*headAppender)) } } else { maxSeq := a.heads[len(a.heads)-1].meta.Sequence for _, b := range a.db.appendable() { if b.meta.Sequence > maxSeq { a.heads = append(a.heads, b.Appender().(*headAppender)) } } } a.db.headmtx.Unlock() } for i := len(a.heads) - 1; i >= 0; i-- { if h := a.heads[i]; t >= h.meta.MinTime { return h, nil } } return nil, ErrNotFound } // ensureHead makes sure that there is a head block for the timestamp t if // it is within or after the currently appendable window. func (db *DB) ensureHead(t int64) error { // Initial case for a new database: we must create the first // AppendableBlocks-1 front padding heads. if len(db.heads) == 0 { for i := int64(db.opts.AppendableBlocks - 1); i >= 0; i-- { if _, err := db.cut(t - i*int64(db.opts.MinBlockDuration)); err != nil { return err } } } for { h := db.heads[len(db.heads)-1] // If t doesn't exceed the range of heads blocks, there's nothing to do. if t < h.meta.MaxTime { return nil } if _, err := db.cut(h.meta.MaxTime); err != nil { return err } } } func (a *dbAppender) Commit() error { var merr MultiError for _, h := range a.heads { merr.Add(h.Commit()) } a.db.mtx.RUnlock() if merr.Err() == nil { a.db.metrics.samplesAppended.Add(float64(a.samples)) } return merr.Err() } func (a *dbAppender) Rollback() error { var merr MultiError for _, h := range a.heads { merr.Add(h.Rollback()) } a.db.mtx.RUnlock() return merr.Err() } func (db *DB) appendable() []*headBlock { if len(db.heads) <= db.opts.AppendableBlocks { return db.heads } return db.heads[len(db.heads)-db.opts.AppendableBlocks:] } func intervalOverlap(amin, amax, bmin, bmax int64) bool { if bmin >= amin && bmin < amax { return true } if amin >= bmin && amin < bmax { return true } return false } func intervalContains(min, max, t int64) bool { return t >= min && t < max } // blocksForInterval returns all blocks within the partition that may contain // data for the given time range. func (db *DB) blocksForInterval(mint, maxt int64) []Block { var bs []Block for _, b := range db.persisted { m := b.Meta() if intervalOverlap(mint, maxt, m.MinTime, m.MaxTime) { bs = append(bs, b) } } for _, b := range db.heads { m := b.Meta() if intervalOverlap(mint, maxt, m.MinTime, m.MaxTime) { bs = append(bs, b) } } return bs } // cut starts a new head block to append to. The completed head block // will still be appendable for the configured grace period. func (db *DB) cut(mint int64) (*headBlock, error) { maxt := mint + int64(db.opts.MinBlockDuration) dir, seq, err := nextSequenceFile(db.dir, "b-") if err != nil { return nil, err } newHead, err := createHeadBlock(dir, seq, db.logger, mint, maxt) if err != nil { return nil, err } db.heads = append(db.heads, newHead) db.seqBlocks[seq] = newHead db.headGen++ newHead.generation = db.headGen select { case db.compactc <- struct{}{}: default: } return newHead, nil } func isBlockDir(fi os.FileInfo) bool { if !fi.IsDir() { return false } if !strings.HasPrefix(fi.Name(), "b-") { return false } if _, err := strconv.ParseUint(fi.Name()[2:], 10, 32); err != nil { return false } return true } func blockDirs(dir string) ([]string, error) { files, err := ioutil.ReadDir(dir) if err != nil { return nil, err } var dirs []string for _, fi := range files { if isBlockDir(fi) { dirs = append(dirs, filepath.Join(dir, fi.Name())) } } return dirs, nil } func sequenceFiles(dir, prefix string) ([]string, error) { files, err := ioutil.ReadDir(dir) if err != nil { return nil, err } var res []string for _, fi := range files { if isSequenceFile(fi, prefix) { res = append(res, filepath.Join(dir, fi.Name())) } } return res, nil } func isSequenceFile(fi os.FileInfo, prefix string) bool { if !strings.HasPrefix(fi.Name(), prefix) { return false } if _, err := strconv.ParseUint(fi.Name()[len(prefix):], 10, 32); err != nil { return false } return true } func nextSequenceFile(dir, prefix string) (string, int, error) { names, err := fileutil.ReadDir(dir) if err != nil { return "", 0, err } i := uint64(0) for _, n := range names { if !strings.HasPrefix(n, prefix) { continue } j, err := strconv.ParseUint(n[len(prefix):], 10, 32) if err != nil { continue } i = j } return filepath.Join(dir, fmt.Sprintf("%s%0.6d", prefix, i+1)), int(i + 1), nil } // The MultiError type implements the error interface, and contains the // Errors used to construct it. type MultiError []error // Returns a concatenated string of the contained errors func (es MultiError) Error() string { var buf bytes.Buffer if len(es) > 1 { fmt.Fprintf(&buf, "%d errors: ", len(es)) } for i, err := range es { if i != 0 { buf.WriteString("; ") } buf.WriteString(err.Error()) } return buf.String() } // Add adds the error to the error list if it is not nil. func (es *MultiError) Add(err error) { if err == nil { return } if merr, ok := err.(MultiError); ok { *es = append(*es, merr...) } else { *es = append(*es, err) } } // Err returns the error list as an error or nil if it is empty. func (es MultiError) Err() error { if len(es) == 0 { return nil } return es } func yoloString(b []byte) string { return *((*string)(unsafe.Pointer(&b))) } func closeAll(cs ...io.Closer) error { var merr MultiError for _, c := range cs { merr.Add(c.Close()) } return merr.Err() }