We're seeing compactions that are taking hours in Cortex which this is
missing. I know while it is not common in Prometheus, I am pretty sure
there are setups where compaction takes longer than 512s. On our own
Prometheus the average compaction duration is 566s.
Signed-off-by: Goutham Veeramachaneni <gouthamve@gmail.com>
* Set the min time of Head properly after truncation
Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
* Fix lint
Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
* Enhance compaction plan logic for completely deleted small block
Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
* Fix review comments
Signed-off-by: Ganesh Vernekar <cs15btech11018@iith.ac.in>
* MultiError: Refactored MultiError for more concise and safe usage.
* Less lines
* Goland IDE was marking every usage of old MultiError "potential nil" error
* It was easy to forgot using Err() when error was returned, now it's safely assured on compile time.
NOTE: Potentially I would rename package to merrors. (: In different PR.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed review comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fix after rebase.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
## Changes:
* Rename dir when deleting
* Ignoring blocks with broken meta.json on start (we do that on reload)
* Compactor writes <ulid>.tmp-for-creation blocks instead of just .tmp
* Delete tmp-for-creation and tmp-for-deletion blocks during DB open.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
I did not want to move those in previous PR to make it easier to review. Now small cleanup time for readability. (:
## Changes
* Merge series goes to `storage/merge.go` leaving `fanout.go` for just fanout code.
* Moved `fanout test` code from weird separate package to storage.
* Unskiped one test: TestFanout_SelectSorted/chunk_querier
* Moved block series set codes responsible for querying blocks to `querier.go` from `compact.go`
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* tsdb: Added ChunkQueryable implementations to db; unified compactor, querier and fanout block iterating.
Chained to https://github.com/prometheus/prometheus/pull/7059
* NewMerge(Chunk)Querier now takies multiple primaries allowing tsdb DB code to use it.
* Added single SeriesEntry / ChunkEntry for all series implementations.
* Unified all vertical, and non vertical for compact and querying to single
merge series / chunk sets by reusing VerticalSeriesMergeFunc for overlapping algorithm (same logic as before)
* Added block (Base/Chunk/)Querier for block querying. We then use populateAndTomb(Base/Chunk/) to iterate over chunks or samples.
* Refactored endpoint tests and querier tests to include subtests.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed comments from Brian and Beorn.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed snapshot test and added chunk iterator support for DBReadOnly.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed race when iterating over Ats first.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed tests.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed populate block tests.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed endpoints test.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed test.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Added test & fixed case of head open chunk.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed DBReadOnly tests and bug producing 1 sample chunks.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Added cases for partial block overlap for multiple full chunks.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Added extra tests for chunk meta after compaction.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Fixed small vertical merge bug and added more tests for that.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* storage: Added Chunks{Queryable/Querier/SeriesSet/Series/Iteratable. Added generic Merge{SeriesSet/Querier} implementation.
## Rationales:
In many places (e.g. chunk Remote read, Thanos Receive fetching chunk from TSDB), we operate on encoded chunks not samples.
This means that we unnecessary decode/encode, wasting CPU, time and memory.
This PR adds chunk iterator interfaces and makes the merge code to be reused between both seriesSets
I will make the use of it in following PR inside tsdb itself. For now fanout implements it and mergers.
All merges now also allows passing series mergers. This opens doors for custom deduplications other than TSDB vertical ones (e.g. offline one we have in Thanos).
## Changes
* Added Chunk versions of all iterating methods. It all starts in Querier/ChunkQuerier. The plan is that
Storage will implement both chunked and samples.
* Added Seek to chunks.Iterator interface for iterating over chunks.
* NewMergeChunkQuerier was added; Both this and NewMergeQuerier are now using generigMergeQuerier to share the code. Generic code was added.
* Improved tests.
* Added some TODO for further simplifications in next PRs.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed Brian's comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Moved s/Labeled/SeriesLabels as per Krasi suggestion.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Addressed Krasi's comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Second iteration of Krasi comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Another round of comments.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
Series() will fetch all the metadata for a series,
even if it's going to be filtered later due to time ranges.
For 1M series we save ~1.1s if you only needed some of the data, but take an
extra ~.2s if you did want everything.
benchmark old ns/op new ns/op delta
BenchmarkHeadSeries/1of1000000-4 1443715987 131553480 -90.89%
BenchmarkHeadSeries/10of1000000-4 1433394040 130730596 -90.88%
BenchmarkHeadSeries/100of1000000-4 1437444672 131360813 -90.86%
BenchmarkHeadSeries/1000of1000000-4 1438958659 132573137 -90.79%
BenchmarkHeadSeries/10000of1000000-4 1438061766 145742377 -89.87%
BenchmarkHeadSeries/100000of1000000-4 1455060948 281659416 -80.64%
BenchmarkHeadSeries/1000000of1000000-4 1633524504 1803550153 +10.41%
benchmark old allocs new allocs delta
BenchmarkHeadSeries/1of1000000-4 4000055 28 -100.00%
BenchmarkHeadSeries/10of1000000-4 4000073 87 -100.00%
BenchmarkHeadSeries/100of1000000-4 4000253 630 -99.98%
BenchmarkHeadSeries/1000of1000000-4 4002053 6036 -99.85%
BenchmarkHeadSeries/10000of1000000-4 4020053 60054 -98.51%
BenchmarkHeadSeries/100000of1000000-4 4200053 600074 -85.71%
BenchmarkHeadSeries/1000000of1000000-4 6000053 6000094 +0.00%
benchmark old bytes new bytes delta
BenchmarkHeadSeries/1of1000000-4 229192184 2488 -100.00%
BenchmarkHeadSeries/10of1000000-4 229193336 5568 -100.00%
BenchmarkHeadSeries/100of1000000-4 229204856 35536 -99.98%
BenchmarkHeadSeries/1000of1000000-4 229320056 345104 -99.85%
BenchmarkHeadSeries/10000of1000000-4 230472056 3894673 -98.31%
BenchmarkHeadSeries/100000of1000000-4 241992056 40511632 -83.26%
BenchmarkHeadSeries/1000000of1000000-4 357192056 402380440 +12.65%
Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
This is part of https://github.com/prometheus/prometheus/pull/5882 that can be done to simplify things.
All todos I added will be fixed in follow up PRs.
* querier.Querier, querier.Appender, querier.SeriesSet, and querier.Series interfaces merged
with storage interface.go. All imports that.
* querier.SeriesIterator replaced by chunkenc.Iterator
* Added chunkenc.Iterator.Seek method and tests for xor implementation (?)
* Since we properly handle SelectParams for Select methods I adjusted min max
based on that. This should help in terms of performance for queries with functions like offset.
* added Seek to deletedIterator and test.
* storage/tsdb was removed as it was only a unnecessary glue with incompatible structs.
No logic was changed, only different source of abstractions, so no need for benchmarks.
Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
Rather than buffer up symbols in RAM, do it one by one
during compaction. Then use the reader's symbol handling
for symbol lookups during the rest of the index write.
There is some slowdown in compaction, due to having to look through a file
rather than a hash lookup. This is noise to the overall cost of compacting
series with thousands of samples though.
benchmark old ns/op new ns/op delta
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 539917175 675341565 +25.08%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 2441815993 2477453524 +1.46%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3978543559 3922909687 -1.40%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 8430219716 8586610007 +1.86%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 1786424591 1909552782 +6.89%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 5328998202 6020839950 +12.98%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 10085059958 11085278690 +9.92%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 25497010155 27018079806 +5.97%
BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 2427391406 2817217987 +16.06%
BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 2592965497 2538805050 -2.09%
BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 2437388343 2668012858 +9.46%
BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 2317095324 2787423966 +20.30%
BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 2600239857 2096973860 -19.35%
benchmark old allocs new allocs delta
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 500851 470794 -6.00%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 821527 791451 -3.66%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 1141562 1111508 -2.63%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 2141576 2111504 -1.40%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 871466 841424 -3.45%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 1941428 1911415 -1.55%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 3071573 3041510 -0.98%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 6771648 6741509 -0.45%
BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 731493 824888 +12.77%
BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 793918 887311 +11.76%
BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 811842 905204 +11.50%
BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 832244 925081 +11.16%
BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 921553 1019162 +10.59%
benchmark old bytes new bytes delta
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 40532648 35698276 -11.93%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 60340216 53409568 -11.49%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 81087336 72065552 -11.13%
BenchmarkCompaction/type=normal,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 142485576 120878544 -15.16%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=101-4 208661368 203831136 -2.31%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=1001-4 347345904 340484696 -1.98%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=2001-4 585185856 576244648 -1.53%
BenchmarkCompaction/type=vertical,blocks=4,series=10000,samplesPerSeriesPerBlock=5001-4 1357641792 1358966528 +0.10%
BenchmarkCompactionFromHead/labelnames=1,labelvalues=100000-4 126486664 119666744 -5.39%
BenchmarkCompactionFromHead/labelnames=10,labelvalues=10000-4 122323192 115117224 -5.89%
BenchmarkCompactionFromHead/labelnames=100,labelvalues=1000-4 126404504 119469864 -5.49%
BenchmarkCompactionFromHead/labelnames=1000,labelvalues=100-4 119047832 112230408 -5.73%
BenchmarkCompactionFromHead/labelnames=10000,labelvalues=10-4 136576016 116634800 -14.60%
Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
With recent speed improvements to populate block,
the cancellation test now fails regularly on CI.
Use contexts to get the index writer to shut down
much faster, and that allows us to make the cancellation
test faster too.
Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
Rather than building up a 2nd copy of all the posting
tables, construct it from the data we've already written
to disk. This takes more time, but saves memory.
Current benchmark numbers have this as slightly faster, but that's
likely due to the synthetic data not having many label names.
Memory usage is roughly halved for the relevant bits.
Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
Rather than keeping the offset of each postings list, instead
keep the nth offset of the offset of the posting list. As postings
list offsets have always been sorted, we can then get to the closest
entry before the one we want an iterate forwards.
I haven't done much tuning on the 32 number, it was chosen to try
not to read through more than a 4k page of data.
Switch to a bulk interface for fetching postings. Use it to avoid having
to re-read parts of the posting offset table when querying lots of it.
For a index with what BenchmarkHeadPostingForMatchers uses RAM
for r.postings drops from 3.79MB to 80.19kB or about 48x.
Bytes allocated go down by 30%, and suprisingly CPU usage drops by
4-6% for typical queries too.
benchmark old ns/op new ns/op delta
BenchmarkPostingsForMatchers/Block/n="1"-4 35231 36673 +4.09%
BenchmarkPostingsForMatchers/Block/n="1",j="foo"-4 563380 540627 -4.04%
BenchmarkPostingsForMatchers/Block/j="foo",n="1"-4 536782 534186 -0.48%
BenchmarkPostingsForMatchers/Block/n="1",j!="foo"-4 533990 541550 +1.42%
BenchmarkPostingsForMatchers/Block/i=~".*"-4 113374598 117969608 +4.05%
BenchmarkPostingsForMatchers/Block/i=~".+"-4 146329884 139651442 -4.56%
BenchmarkPostingsForMatchers/Block/i=~""-4 50346510 44961127 -10.70%
BenchmarkPostingsForMatchers/Block/i!=""-4 41261550 35356165 -14.31%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",j="foo"-4 112544418 116904010 +3.87%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",i!="2",j="foo"-4 112487086 116864918 +3.89%
BenchmarkPostingsForMatchers/Block/n="1",i!=""-4 41094758 35457904 -13.72%
BenchmarkPostingsForMatchers/Block/n="1",i!="",j="foo"-4 41906372 36151473 -13.73%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",j="foo"-4 147262414 140424800 -4.64%
BenchmarkPostingsForMatchers/Block/n="1",i=~"1.+",j="foo"-4 28615629 27872072 -2.60%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!="2",j="foo"-4 147117177 140462403 -4.52%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!~"2.*",j="foo"-4 175096826 167902298 -4.11%
benchmark old allocs new allocs delta
BenchmarkPostingsForMatchers/Block/n="1"-4 4 6 +50.00%
BenchmarkPostingsForMatchers/Block/n="1",j="foo"-4 7 11 +57.14%
BenchmarkPostingsForMatchers/Block/j="foo",n="1"-4 7 11 +57.14%
BenchmarkPostingsForMatchers/Block/n="1",j!="foo"-4 15 17 +13.33%
BenchmarkPostingsForMatchers/Block/i=~".*"-4 100010 100012 +0.00%
BenchmarkPostingsForMatchers/Block/i=~".+"-4 200069 200040 -0.01%
BenchmarkPostingsForMatchers/Block/i=~""-4 200072 200045 -0.01%
BenchmarkPostingsForMatchers/Block/i!=""-4 200070 200041 -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",j="foo"-4 100013 100017 +0.00%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",i!="2",j="foo"-4 100017 100023 +0.01%
BenchmarkPostingsForMatchers/Block/n="1",i!=""-4 200073 200046 -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i!="",j="foo"-4 200075 200050 -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",j="foo"-4 200074 200049 -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~"1.+",j="foo"-4 111165 111150 -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!="2",j="foo"-4 200078 200055 -0.01%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!~"2.*",j="foo"-4 311282 311238 -0.01%
benchmark old bytes new bytes delta
BenchmarkPostingsForMatchers/Block/n="1"-4 264 296 +12.12%
BenchmarkPostingsForMatchers/Block/n="1",j="foo"-4 360 424 +17.78%
BenchmarkPostingsForMatchers/Block/j="foo",n="1"-4 360 424 +17.78%
BenchmarkPostingsForMatchers/Block/n="1",j!="foo"-4 520 552 +6.15%
BenchmarkPostingsForMatchers/Block/i=~".*"-4 1600461 1600482 +0.00%
BenchmarkPostingsForMatchers/Block/i=~".+"-4 24900801 17259077 -30.69%
BenchmarkPostingsForMatchers/Block/i=~""-4 24900836 17259151 -30.69%
BenchmarkPostingsForMatchers/Block/i!=""-4 24900760 17259048 -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",j="foo"-4 1600557 1600621 +0.00%
BenchmarkPostingsForMatchers/Block/n="1",i=~".*",i!="2",j="foo"-4 1600717 1600813 +0.01%
BenchmarkPostingsForMatchers/Block/n="1",i!=""-4 24900856 17259176 -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i!="",j="foo"-4 24900952 17259304 -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",j="foo"-4 24900993 17259333 -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~"1.+",j="foo"-4 3788311 3142630 -17.04%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!="2",j="foo"-4 24901137 17259509 -30.69%
BenchmarkPostingsForMatchers/Block/n="1",i=~".+",i!~"2.*",j="foo"-4 28693086 20405680 -28.88%
Signed-off-by: Brian Brazil <brian.brazil@robustperception.io>
* refactor block size calculation
The block size is kept in memory and not in the meta file anymore.
It now includes the size of the meta file itself for a more
correct block size.
It fixes a bug where the size didn't change when calling `block.Delete()`.
Adds a dedicated test to ensure correct block sizes.
This allows opening a db in a read only mode as it doesn't write to the meta file anymore.
Signed-off-by: Krasi Georgiev <8903888+krasi-georgiev@users.noreply.github.com>
since golang 1.12 no special handling is required for file.Sync()
@pborzenkov thanks for the pointer.
Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com>
Testing that createBlock creates blocks that can be opened.
and checking the os.RemoveAll for errors will catch errors for un-closed files under windows.
Many missing .Close() calls were added for fixing failing os.RemoveAll
Signed-off-by: Krasi Georgiev <kgeorgie@redhat.com>
`if ds[i].meta.MinTime < t0 || ds[i].meta.MaxTime > t0+tr `, ds[i].meta.MinTime is always larger or equal to t0, so no need for this check.
`ulid.Parse` only checks if the length is 26. So changed to using `ulid.ParseStrict` to also check the validity of ulid.
* Additional logging in compact.go - logged time needed for writing blocks to disk
Signed-off-by: Radoslaw Lesniewski <Radoslaw.Lesniewski@sabre.com>
* Additional logging in compact.go - code formatted
Signed-off-by: Radoslaw Lesniewski <Radoslaw.Lesniewski@sabre.com>
Levi Harrison