Optimize histogram iterators
Histogram iterators allocate new objects in the AtHistogram and
AtFloatHistogram methods, which makes calculating rates over long
ranges expensive.
In #13215 we allowed an existing object to be reused
when converting an integer histogram to a float histogram. This commit follows
the same idea and allows injecting an existing object in the AtHistogram and
AtFloatHistogram methods. When the injected value is nil, iterators allocate
new histograms, otherwise they populate and return the injected object.
The commit also adds a CopyTo method to Histogram and FloatHistogram which
is used in the BufferedIterator to overwrite items in the ring instead of making
new copies.
Note that a specialized HPoint pool is needed for all of this to work
(`matrixSelectorHPool`).
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Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
Co-authored-by: George Krajcsovits <krajorama@users.noreply.github.com>
The 'ToFloat' method on integer histograms currently allocates new memory
each time it is called.
This commit adds an optional *FloatHistogram parameter that can be used
to reuse span and bucket slices. It is up to the caller to make sure the
input float histogram is not used anymore after the call.
Signed-off-by: Filip Petkovski <filip.petkovsky@gmail.com>
The ChunkReader interface's Chunk() has been changed to ChunkOrIterable().
This is a precursor to OOO native histogram support - with OOO native histograms, the chunks.Meta passed to Chunk() can result in multiple chunks being returned rather than just a single chunk (e.g. if oooMergedChunk has a counter reset in the middle).
To support this, ChunkOrIterable() requires either a single chunk or an iterable to be returned. If an iterable is returned, the caller has the responsibility of converting the samples from the iterable into possibly multiple chunks. The OOOHeadChunkReader now returns an iterable rather than a chunk to prepare for the native histograms case. Also as a beneficial side effect, oooMergedChunk and boundedChunk has been simplified as they only need to implement the Iterable interface now, not the full Chunk interface.
---------
Signed-off-by: Fiona Liao <fiona.y.liao@gmail.com>
Co-authored-by: George Krajcsovits <krajorama@users.noreply.github.com>
Add a chunk size limit in bytes
This creates a hard cap for XOR chunks of 1024 bytes.
The limit for histogram chunk is also 1024 bytes, but it is a soft limit as a histogram has a dynamic size, and even a single one could be larger than 1024 bytes.
This also avoids cutting new histogram chunks if the existing chunk has fewer than 10 histograms yet. In that way, we are accepting "jumbo chunks" in order to have at least 10 histograms in a chunk, allowing compression to kick in.
Signed-off-by: Justin Lei <justin.lei@grafana.com>
So far, `ValidateHistogram` would not detect if the count did not
include the count in the zero bucket. This commit fixes the problem
and updates all the tests that have been undetected offenders so far.
Note that this problem would only ever create false negatives, so we
never falsely rejected to store a histogram because of it.
On the other hand, `ValidateFloatHistogram` has been to strict with
the count being at least as large as the sum of the counts in all the
buckets. Float precision issues could create false positives here, see
products of PromQL evaluations, it's actually quite hard to put an
upper limit no the floating point imprecision. Users could produce the
weirdest expressions, maxing out float precision problems. Therefore,
this commit simply removes that particular check from
`ValidateFloatHistogram`.
Signed-off-by: beorn7 <beorn@grafana.com>
Snappy remains as the default compression but there is now a flag to switch
the compression algorithm.
Signed-off-by: Justin Lei <justin.lei@grafana.com>
We haven't updated golint-ci in our CI yet, but this commit prepares
for that.
There are a lot of new warnings, and it is mostly because the "revive"
linter got updated. I agree with most of the new warnings, mostly
around not naming unused function parameters (although it is justified
in some cases for documentation purposes – while things like mocks are
a good example where not naming the parameter is clearer).
I'm pretty upset about the "empty block" warning to include `for`
loops. It's such a common pattern to do something in the head of the
`for` loop and then have an empty block. There is still an open issue
about this: https://github.com/mgechev/revive/issues/810 I have
disabled "revive" altogether in files where empty blocks are used
excessively, and I have made the effort to add individual
`// nolint:revive` where empty blocks are used just once or twice.
It's borderline noisy, though, but let's go with it for now.
I should mention that none of the "empty block" warnings for `for`
loop bodies were legitimate.
Signed-off-by: beorn7 <beorn@grafana.com>
In the past, every sample value was a float, so it was fine to call a
variable holding such a float "value" or "sample". With native
histograms, a sample might have a histogram value. And a histogram
value is still a value. Calling a float value just "value" or "sample"
or "V" is therefore misleading. Over the last few commits, I already
renamed many variables, but this cleans up a few more places where the
changes are more invasive.
Note that we do not to attempt naming in the JSON APIs or in the
protobufs. That would be quite a disruption. However, internally, we
can call variables as we want, and we should go with the option of
avoiding misunderstandings.
Signed-off-by: beorn7 <beorn@grafana.com>
It seems that readOnlyDB was still opened which blocked the temp dir
cleanup.
Also changed the copy dir to be another TempDir instead of manually
creating one.
Signed-off-by: Oleg Zaytsev <mail@olegzaytsev.com>
Test that blocks are not marked as "compaction failed" during shutdown.
This shouldn't happen but this test currently fails.
Signed-off-by: Oleg Zaytsev <mail@olegzaytsev.com>
It took a `Labels` where the memory could be re-used, but in practice
this hardly ever benefitted. Especially after converting `relabel.Process`
to `relabel.ProcessBuilder`.
Comparing the parameter to `nil` was a bug; `EmptyLabels` is not `nil`
so the slice was reallocated multiple times by `append`.
Lastly `Builder.Labels()` now estimates that the final size will depend
on labels added and deleted.
Signed-off-by: Bryan Boreham <bjboreham@gmail.com>
This is a bit more conservative than we could be. As long as a chunk
isn't the first in a block, we can be pretty sure that the previous
chunk won't disappear. However, the incremental gain of returning
NotCounterReset in these cases is probably very small and might not be
worth the code complications.
Wwith this, we now also pay attention to an explicitly set counter
reset during ingestion. While the case doesn't show up in practice
yet, there could be scenarios where the metric source knows there was
a counter reset even if it might not be visible from the values in the
histogram. It is also useful for testing.
Signed-off-by: beorn7 <beorn@grafana.com>
Extends Appender.AppendHistogram function to accept the FloatHistogram. TSDB supports appending, querying, WAL replay, for this new type of histogram.
Signed-off-by: Marc Tudurí <marctc@protonmail.com>
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Co-authored-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Introduce out-of-order TSDB support
This implementation is based on this design doc:
https://docs.google.com/document/d/1Kppm7qL9C-BJB1j6yb6-9ObG3AbdZnFUBYPNNWwDBYM/edit?usp=sharing
This commit adds support to accept out-of-order ("OOO") sample into the TSDB
up to a configurable time allowance. If OOO is enabled, overlapping querying
are automatically enabled.
Most of the additions have been borrowed from
https://github.com/grafana/mimir-prometheus/
Here is the list ist of the original commits cherry picked
from mimir-prometheus into this branch:
- 4b2198d7ec
- 2836e5513f
- 00b379c3a5
- ff0dc75758
- a632c73352
- c6f3d4ab33
- 5e8406a1d4
- abde1e0ba1
- e70e769889
- df59320886
Co-authored-by: Jesus Vazquez <jesus.vazquez@grafana.com>
Co-authored-by: Ganesh Vernekar <ganeshvern@gmail.com>
Co-authored-by: Dieter Plaetinck <dieter@grafana.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* gofumpt files
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Add license header to missing files
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix OOO tests due to existing chunk disk mapper implementation
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix truncate int overflow
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Add Sync method to the WAL and update tests
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* remove useless sync
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Update minOOOTime after truncating Head
* Update minOOOTime after truncating Head
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix lint
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Add a unit test
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Load OutOfOrderTimeWindow only once per appender
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix OOO Head LabelValues and PostingsForMatchers
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix replay of OOO mmap chunks
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Remove unnecessary err check
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Prevent panic with ApplyConfig
Signed-off-by: Ganesh Vernekar 15064823+codesome@users.noreply.github.com
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Run OOO compaction after restart if there is OOO data from WBL
Signed-off-by: Ganesh Vernekar 15064823+codesome@users.noreply.github.com
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Apply Bartek's suggestions
Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Refactor OOO compaction
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Address comments and TODOs
- Added a comment explaining why we need the allow overlapping
compaction toggle
- Clarified TSDBConfig OutOfOrderTimeWindow doc
- Added an owner to all the TODOs in the code
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Run go format
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix remaining review comments
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix tests
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Change wbl reference when truncating ooo in TestHeadMinOOOTimeUpdate
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
* Fix TestWBLAndMmapReplay test failure on windows
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Address most of the feedback
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Refactor the block meta for out of order
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix windows error
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix review comments
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Signed-off-by: Jesus Vazquez <jesus.vazquez@grafana.com>
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Signed-off-by: Ganesh Vernekar 15064823+codesome@users.noreply.github.com
Co-authored-by: Ganesh Vernekar <15064823+codesome@users.noreply.github.com>
Co-authored-by: Ganesh Vernekar <ganeshvern@gmail.com>
Co-authored-by: Dieter Plaetinck <dieter@grafana.com>
Co-authored-by: Oleg Zaytsev <mail@olegzaytsev.com>
Co-authored-by: Bartlomiej Plotka <bwplotka@gmail.com>
* Add runtime config to control native histogram ingestion
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Make the config into a CLI flag
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
- Pick At... method via return value of Next/Seek.
- Do not clobber returned buckets.
- Add partial FloatHistogram suppert.
Note that the promql package is now _only_ dealing with
FloatHistograms, following the idea that PromQL only knows float
values.
As a byproduct, I have removed the histogramSeries metric. In my
understanding, series can have both float and histogram samples, so
that metric doesn't make sense anymore.
As another byproduct, I have converged the sampleBuf and the
histogramSampleBuf in memSeries into one. The sample type stored in
the sampleBuf has been extended to also contain histograms even before
this commit.
Signed-off-by: beorn7 <beorn@grafana.com>
This is to avoid copying the many fields of a histogram.Histogram all
the time.
This also fixes a bunch of formerly broken tests.
Signed-off-by: beorn7 <beorn@grafana.com>
This creates a new `model` directory and moves all data-model related
packages over there:
exemplar labels relabel rulefmt textparse timestamp value
All the others are more or less utilities and have been moved to `util`:
gate logging modetimevfs pool runtime
Signed-off-by: beorn7 <beorn@grafana.com>
A lot of this code was hacked together, literally during a
hackathon. This commit intends not to change the code substantially,
but just make the code obey the usual style practices.
A (possibly incomplete) list of areas:
* Generally address linter warnings.
* The `pgk` directory is deprecated as per dev-summit. No new packages should
be added to it. I moved the new `pkg/histogram` package to `model`
anticipating what's proposed in #9478.
* Make the naming of the Sparse Histogram more consistent. Including
abbreviations, there were just too many names for it: SparseHistogram,
Histogram, Histo, hist, his, shs, h. The idea is to call it "Histogram" in
general. Only add "Sparse" if it is needed to avoid confusion with
conventional Histograms (which is rare because the TSDB really has no notion
of conventional Histograms). Use abbreviations only in local scope, and then
really abbreviate (not just removing three out of seven letters like in
"Histo"). This is in the spirit of
https://github.com/golang/go/wiki/CodeReviewComments#variable-names
* Several other minor name changes.
* A lot of formatting of doc comments. For one, following
https://github.com/golang/go/wiki/CodeReviewComments#comment-sentences
, but also layout question, anticipating how things will look like
when rendered by `godoc` (even where `godoc` doesn't render them
right now because they are for unexported types or not a doc comment
at all but just a normal code comment - consistency is queen!).
* Re-enabled `TestQueryLog` and `TestEndopints` (they pass now,
leaving them disabled was presumably an oversight).
* Bucket iterator for histogram.Histogram is now created with a
method.
* HistogramChunk.iterator now allows iterator recycling. (I think
@dieterbe only commented it out because he was confused by the
question in the comment.)
* HistogramAppender.Append panics now because we decided to treat
staleness marker differently.
Signed-off-by: beorn7 <beorn@grafana.com>
* Update querier.go to support Head compaction with histograms
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Add test for Head compaction with histograms
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Fix tests
Signed-off-by: Ganesh Vernekar <ganeshvern@gmail.com>
* Added walreplay API endpoint
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Added starting page to react-ui
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Documented the new endpoint
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Fixed typos
Signed-off-by: Levi Harrison <git@leviharrison.dev>
Co-authored-by: Julius Volz <julius.volz@gmail.com>
* Removed logo
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Changed isResponding to isUnexpected
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Changed width of progress bar
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Changed width of progress bar
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Added DB stats object
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Updated starting page to work with new fields
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Passing nil
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Passing nil (pt. 2)
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Passing nil (pt. 3)
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Passing nil (and also implementing a method this time) (pt. 4)
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Passing nil (and also implementing a method this time) (pt. 5)
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Changed const to let
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Passing nil (pt. 6)
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Remove SetStats method
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Added comma
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Changed api
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Changed to triple equals
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Fixed data response types
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Don't return pointer
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Changed version
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Fixed interface issue
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Fixed pointer
Signed-off-by: Levi Harrison <git@leviharrison.dev>
* Fixed copying lock value error
Signed-off-by: Levi Harrison <git@leviharrison.dev>
Co-authored-by: Julius Volz <julius.volz@gmail.com>
This moves the label lookup into TSDB, whilst still keeping the cached-ref optimisation for repeated Appends.
This makes the API easier to consume and implement. In particular this change is motivated by the scrape-time-aggregation work, which I don't think is possible to implement without it as it needs access to label values.
Signed-off-by: Tom Wilkie <tom.wilkie@gmail.com>
Filip Petkovski