diff --git a/api/datastore/migrator/migrate_2_33_0.go b/api/datastore/migrator/migrate_2_33_0.go
index f000a780a..83a822cb1 100644
--- a/api/datastore/migrator/migrate_2_33_0.go
+++ b/api/datastore/migrator/migrate_2_33_0.go
@@ -11,8 +11,10 @@ func (m *Migrator) migrateEdgeGroupEndpointsToRoars_2_33_0() error {
 	}
 
 	for _, eg := range egs {
-		eg.EndpointIDs = roar.FromSlice(eg.Endpoints)
-		eg.Endpoints = nil
+		if eg.EndpointIDs.Len() == 0 {
+			eg.EndpointIDs = roar.FromSlice(eg.Endpoints)
+			eg.Endpoints = nil
+		}
 
 		if err := m.edgeGroupService.Update(eg.ID, &eg); err != nil {
 			return err
diff --git a/api/datastore/migrator/migrate_2_33_test.go b/api/datastore/migrator/migrate_2_33_test.go
new file mode 100644
index 000000000..2b197f54f
--- /dev/null
+++ b/api/datastore/migrator/migrate_2_33_test.go
@@ -0,0 +1,55 @@
+package migrator
+
+import (
+	"testing"
+
+	portainer "github.com/portainer/portainer/api"
+	"github.com/portainer/portainer/api/database/boltdb"
+	"github.com/portainer/portainer/api/dataservices/edgegroup"
+
+	"github.com/stretchr/testify/require"
+)
+
+func TestMigrateEdgeGroupEndpointsToRoars_2_33_0Idempotency(t *testing.T) {
+	var conn portainer.Connection = &boltdb.DbConnection{Path: t.TempDir()}
+	err := conn.Open()
+	require.NoError(t, err)
+
+	defer conn.Close()
+
+	edgeGroupService, err := edgegroup.NewService(conn)
+	require.NoError(t, err)
+
+	edgeGroup := &portainer.EdgeGroup{
+		ID:        1,
+		Name:      "test-edge-group",
+		Endpoints: []portainer.EndpointID{1, 2, 3},
+	}
+
+	err = conn.CreateObjectWithId(edgegroup.BucketName, int(edgeGroup.ID), edgeGroup)
+	require.NoError(t, err)
+
+	m := NewMigrator(&MigratorParameters{EdgeGroupService: edgeGroupService})
+
+	// Run migration once
+
+	err = m.migrateEdgeGroupEndpointsToRoars_2_33_0()
+	require.NoError(t, err)
+
+	migratedEdgeGroup, err := edgeGroupService.Read(edgeGroup.ID)
+	require.NoError(t, err)
+
+	require.Len(t, migratedEdgeGroup.Endpoints, 0)
+	require.Equal(t, len(edgeGroup.Endpoints), migratedEdgeGroup.EndpointIDs.Len())
+
+	// Run migration again to ensure the results didn't change
+
+	err = m.migrateEdgeGroupEndpointsToRoars_2_33_0()
+	require.NoError(t, err)
+
+	migratedEdgeGroup, err = edgeGroupService.Read(edgeGroup.ID)
+	require.NoError(t, err)
+
+	require.Len(t, migratedEdgeGroup.Endpoints, 0)
+	require.Equal(t, len(edgeGroup.Endpoints), migratedEdgeGroup.EndpointIDs.Len())
+}