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Boyuan Yao 7a58dc5ad2 Update metainfo patch branch (#2517) ... * init * rename and remove useless func * basic chunk * add evoformer * align evoformer * add meta * basic chunk * basic memory * finish basic inference memory estimation * finish memory estimation * fix bug * finish memory estimation * add part of index tracer * finish basic index tracer * add doc string * add doc str * polish code * polish code * update active log * polish code * add possible region search * finish region search loop * finish chunk define * support new op * rename index tracer * finishi codegen on msa * redesign index tracer, add source and change compute * pass outproduct mean * code format * code format * work with outerproductmean and msa * code style * code style * code style * code style * change threshold * support check_index_duplicate * support index dupilictae and update loop * support output * update memory estimate * optimise search * fix layernorm * move flow tracer * refactor flow tracer * format code * refactor flow search * code style * adapt codegen to prepose node * code style * remove abandoned function * remove flow tracer * code style * code style * reorder nodes * finish node reorder * update run * code style * add chunk select class * add chunk select * code style * add chunksize in emit, fix bug in reassgin shape * code style * turn off print mem * add evoformer openfold init * init openfold * add benchmark * add print * code style * code style * init openfold * update openfold * align openfold * use max_mem to control stratge * update source add * add reorder in mem estimator * improve reorder efficeincy * support ones_like, add prompt if fit mode search fail * fix a bug in ones like, dont gen chunk if dim size is 1 * fix bug again * update min memory stratege, reduce mem usage by 30% * last version of benchmark * refactor structure * restruct dir * update test * rename * take apart chunk code gen * close mem and code print * code format * rename ambiguous variable * seperate flow tracer * seperate input node dim search * seperate prepose_nodes * seperate non chunk input * seperate reorder * rename * ad reorder graph * seperate trace flow * code style * code style * fix typo * set benchmark * rename test * update codegen test * Fix state_dict key missing issue of the ZeroDDP (#2363) * Fix state_dict output for ZeroDDP duplicated parameters * Rewrite state_dict based on get_static_torch_model * Modify get_static_torch_model to be compatible with the lower version (ZeroDDP) * update codegen test * update codegen test * add chunk search test * code style * add available * [hotfix] fix gpt gemini example (#2404) * [hotfix] fix gpt gemini example * [example] add new assertions * remove autochunk_available * [workflow] added nightly release to pypi (#2403) * add comments * code style * add doc for search chunk * [doc] updated readme regarding pypi installation (#2406) * add doc for search * [doc] updated kernel-related optimisers' docstring (#2385) * [doc] updated kernel-related optimisers' docstring * polish doc * rename trace_index to trace_indice * rename function from index to indice * rename * rename in doc * [polish] polish code for get_static_torch_model (#2405) * [gemini] polish code * [testing] remove code * [gemini] make more robust * rename * rename * remove useless function * [worfklow] added coverage test (#2399) * [worfklow] added coverage test * polish code * polish code * polish code * polish code * polish code * polish code * polish code * polish code * add doc for trace indice * [docker] updated Dockerfile and release workflow (#2410) * add doc * update doc * add available * change imports * add test in import * [workflow] refactored the example check workflow (#2411) * [workflow] refactored the example check workflow * polish code * polish code * polish code * polish code * polish code * polish code * polish code * polish code * polish code * polish code * polish code * Update parallel_context.py (#2408) * [hotfix] add DISTPAN argument for benchmark (#2412) * change the benchmark config file * change config * revert config file * rename distpan to distplan * [workflow] added precommit check for code consistency (#2401) * [workflow] added precommit check for code consistency * polish code * polish code * polish code * polish code * polish code * polish code * polish code * adapt new fx * [workflow] added translation for non-english comments (#2414) * [setup] refactored setup.py for dependency graph (#2413) * change import * update doc * [workflow] auto comment if precommit check fails (#2417) * [hotfix] add norm clearing for the overflow step (#2416) * [examples] adding tflops to PaLM (#2365) * [workflow]auto comment with test coverage report (#2419) * [workflow]auto comment with test coverage report * polish code * polish yaml * [doc] added documentation for CI/CD (#2420) * [doc] added documentation for CI/CD * polish markdown * polish markdown * polish markdown * [example] removed duplicated stable diffusion example (#2424) * [zero] add inference mode and its unit test (#2418) * [workflow] report test coverage even if below threshold (#2431) * [example] improved the clarity yof the example readme (#2427) * [example] improved the clarity yof the example readme * polish workflow * polish workflow * polish workflow * polish workflow * polish workflow * polish workflow * [ddp] add is_ddp_ignored (#2434) [ddp] rename to is_ddp_ignored * [workflow] make test coverage report collapsable (#2436) * [autoparallel] add shard option (#2423) * [fx] allow native ckpt trace and codegen. (#2438) * [cli] provided more details if colossalai run fail (#2442) * [autoparallel] integrate device mesh initialization into autoparallelize (#2393) * [autoparallel] integrate device mesh initialization into autoparallelize * add megatron solution * update gpt autoparallel examples with latest api * adapt beta value to fit the current computation cost * [zero] fix state_dict and load_state_dict for ddp ignored parameters (#2443) * [ddp] add is_ddp_ignored [ddp] rename to is_ddp_ignored * [zero] fix state_dict and load_state_dict * fix bugs * [zero] update unit test for ZeroDDP * [example] updated the hybrid parallel tutorial (#2444) * [example] updated the hybrid parallel tutorial * polish code * [zero] add warning for ignored parameters (#2446) * [example] updated large-batch optimizer tutorial (#2448) * [example] updated large-batch optimizer tutorial * polish code * polish code * [example] fixed seed error in train_dreambooth_colossalai.py (#2445) * [workflow] fixed the on-merge condition check (#2452) * [workflow] automated the compatiblity test (#2453) * [workflow] automated the compatiblity test * polish code * [autoparallel] update binary elementwise handler (#2451) * [autoparallel] update binary elementwise handler * polish * [workflow] automated bdist wheel build (#2459) * [workflow] automated bdist wheel build * polish workflow * polish readme * polish readme * Fix False warning in initialize.py (#2456) * Update initialize.py * pre-commit run check * [examples] update autoparallel tutorial demo (#2449) * [examples] update autoparallel tutorial demo * add test_ci.sh * polish * add conda yaml * [cli] fixed hostname mismatch error (#2465) * [example] integrate autoparallel demo with CI (#2466) * [example] integrate autoparallel demo with CI * polish code * polish code * polish code * polish code * [zero] low level optim supports ProcessGroup (#2464) * [example] update vit ci script (#2469) * [example] update vit ci script * [example] update requirements * [example] update requirements * [example] integrate seq-parallel tutorial with CI (#2463) * [zero] polish low level optimizer (#2473) * polish pp middleware (#2476) Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com> * [example] update gpt gemini example ci test (#2477) * [zero] add unit test for low-level zero init (#2474) * [workflow] fixed the skip condition of example weekly check workflow (#2481) * [example] stable diffusion add roadmap * add dummy test_ci.sh * [example] stable diffusion add roadmap (#2482) * [CI] add test_ci.sh for palm, opt and gpt (#2475) * polish code * [example] titans for gpt * polish readme * remove license * polish code * update readme * [example] titans for gpt (#2484) * [autoparallel] support origin activation ckpt on autoprallel system (#2468) * [autochunk] support evoformer tracer (#2485) support full evoformer tracer, which is a main module of alphafold. previously we just support a simplifed version of it. 1. support some evoformer's op in fx 2. support evoformer test 3. add repos for test code * [example] fix requirements (#2488) * [zero] add unit testings for hybrid parallelism (#2486) * [hotfix] gpt example titans bug #2493 * polish code and fix dataloader bugs * [hotfix] gpt example titans bug #2493 (#2494) * [fx] allow control of ckpt_codegen init (#2498) * [fx] allow control of ckpt_codegen init Currently in ColoGraphModule, ActivationCheckpointCodeGen will be set automatically in __init__. But other codegen can't be set if so. So I add an arg to control whether to set ActivationCheckpointCodeGen in __init__. * code style * [example] dreambooth example * add test_ci.sh to dreambooth * [autochunk] support autochunk on evoformer (#2497) * Revert "Update parallel_context.py (#2408)" This reverts commit 7d5640b9db. * add avg partition (#2483) Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com> * [auto-chunk] support extramsa (#3) (#2504) * [utils] lazy init. (#2148) * [utils] lazy init. * [utils] remove description. * [utils] complete. * [utils] finalize. * [utils] fix names. * [autochunk] support parsing blocks (#2506) * [zero] add strict ddp mode (#2508) * [zero] add strict ddp mode * [polish] add comments for strict ddp mode * [zero] fix test error * [doc] update opt and tutorial links (#2509) * [workflow] fixed changed file detection (#2515) Co-authored-by: oahzxl <xuanlei.zhao@gmail.com> Co-authored-by: eric8607242 <e0928021388@gmail.com> Co-authored-by: HELSON <c2h214748@gmail.com> Co-authored-by: Frank Lee <somerlee.9@gmail.com> Co-authored-by: Haofan Wang <haofanwang.ai@gmail.com> Co-authored-by: Jiarui Fang <fangjiarui123@gmail.com> Co-authored-by: ZijianYY <119492445+ZijianYY@users.noreply.github.com> Co-authored-by: YuliangLiu0306 <72588413+YuliangLiu0306@users.noreply.github.com> Co-authored-by: Super Daniel <78588128+super-dainiu@users.noreply.github.com> Co-authored-by: ver217 <lhx0217@gmail.com> Co-authored-by: Ziyue Jiang <ziyue.jiang97@gmail.com> Co-authored-by: Ziyue Jiang <ziyue.jiang@gmail.com> Co-authored-by: oahzxl <43881818+oahzxl@users.noreply.github.com> Co-authored-by: binmakeswell <binmakeswell@gmail.com> Co-authored-by: Fazzie-Maqianli <55798671+Fazziekey@users.noreply.github.com> Co-authored-by: アマデウス <kurisusnowdeng@users.noreply.github.com>		2 years ago
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commons	[example] make gpt example directory more clear (#2353)	2 years ago
gpt	Update metainfo patch branch (#2517)	2 years ago
opt	Update metainfo patch branch (#2517)	2 years ago
palm	Update metainfo patch branch (#2517)	2 years ago
roberta	[NFC] Update roberta/README.md (#2350)	2 years ago