[pipeline] add pipeline support for T5Stack/T5EncoderModel (#4300)

* modify t5 policy & add test

* pipeline stage distribution for t5

* complete t5 base policy

* t5 stack: halfway

* modify gpt2 pipeline test

* complete pipeline forward for T5Stack/T5EncoderModel

* fix docstring

* move t5 util tests to test_pipeline

colossalai/shardformer/modeling/t5.py

@@ -0,0 +1,279 @@
+from functools import partial
+from types import MethodType
+from typing import Callable, Dict, List, Optional, Tuple, Union
+
+import torch
+from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
+from torch.utils.checkpoint import checkpoint
+from transformers.modeling_outputs import BaseModelOutput, BaseModelOutputWithPastAndCrossAttentions
+from transformers.models.t5.modeling_t5 import T5EncoderModel, T5ForConditionalGeneration, T5Model, T5Stack
+from transformers.utils import logging
+
+from colossalai.pipeline.stage_manager import PipelineStageManager
+
+
+class T5PipelineForwards:
+    '''
+    This class serves as a micro library for forward function substitution of
+    T5 models under pipeline setting.
+    '''
+
+    @staticmethod
+    def t5_stack_forward(
+        self: T5Stack,
+        input_ids: Optional[torch.LongTensor] = None,
+        attention_mask: Optional[torch.FloatTensor] = None,
+        encoder_hidden_states: Optional[torch.Tensor] = None,
+        encoder_attention_mask: Optional[torch.FloatTensor] = None,
+        inputs_embeds: Optional[torch.FloatTensor] = None,
+        head_mask: Optional[torch.FloatTensor] = None,
+        cross_attn_head_mask: Optional[torch.Tensor] = None,
+        past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
+        use_cache: Optional[bool] = False,
+        output_attentions: Optional[bool] = False,
+        output_hidden_states: Optional[bool] = False,
+        return_dict: Optional[bool] = None,
+        stage_manager: Optional[PipelineStageManager] = None,
+        hidden_states: Optional[torch.FloatTensor] = None,
+        position_bias: Optional[torch.Tensor] = None,
+        encoder_decoder_position_bias: Optional[torch.Tensor] = None,
+        stage_index: Optional[List[int]] = None,
+        decoder_starting_stage: Optional[int] = None,
+    ) -> Union[Dict, Tuple, BaseModelOutputWithPastAndCrossAttentions]:
+
+        # This function is modified on the basis of transformers.models.t5.modeling_t5.T5Stack.forward.
+        # Please refer to original code of transformers for more details.
+
+        logger = logging.get_logger(__name__)
+
+        # TODO: left the recording kv-value tensors as () or None type, this feature may be added in the future.
+        if past_key_values:
+            logger.warning_once('Non-empty past_key_values is not supported for pipeline models at the moment.')
+            past_key_values = None
+        if output_attentions:
+            logger.warning_once('output_attentions=True is not supported for pipeline models at the moment.')
+            output_attentions = False
+        if output_hidden_states:
+            logger.warning_once('output_hidden_states=True is not supported for pipeline models at the moment.')
+            output_hidden_states = False
+        if use_cache:
+            logger.warning_once('use_cache=True is not supported for pipeline models at the moment.')
+            use_cache = False
+        if use_cache is True:
+            if not in_decoder:
+                raise ValueError(f"`use_cache` can only be set to `True` if {self} is used as a decoder")
+        if self.gradient_checkpointing and self.training:
+            if use_cache:
+                logger.warning_once(
+                    "`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`...")
+                use_cache = False
+
+        stage = stage_manager.stage
+        in_decoder = self.is_decoder
+        if in_decoder != (stage >= decoder_starting_stage):
+            raise ValueError("Config in T5Stack is not aligned with pipeline setting.")
+
+        # at_first_stage: current stage is the first stage of encoder/decoder, taking input_ids/input_embedds
+        # at_last_stage: current stage is the last stage of encoder/decoder, making outputs the same form as huggingface
+        at_first_stage = (stage == 0) or (stage == decoder_starting_stage)
+        at_last_stage = (stage == decoder_starting_stage - 1) or (stage == stage_manager.num_stages - 1)
+
+        # Process inputs if at the first stage of encoder/decoder.
+        if at_first_stage:
+            if input_ids is not None and inputs_embeds is not None:
+                err_msg_prefix = "decoder_" if in_decoder else ""
+                raise ValueError(
+                    f"You cannot specify both {err_msg_prefix}input_ids and {err_msg_prefix}inputs_embeds at the same time"
+                )
+            elif input_ids is not None:
+                input_shape = input_ids.size()
+                input_ids = input_ids.view(-1, input_shape[-1])
+            elif inputs_embeds is not None:
+                input_shape = inputs_embeds.size()[:-1]
+            else:
+                err_msg_prefix = "decoder_" if in_decoder else ""
+                raise ValueError(
+                    f"You have to specify either {err_msg_prefix}input_ids or {err_msg_prefix}inputs_embeds")
+            if inputs_embeds is None:
+                if self.embed_tokens is None:
+                    raise ValueError("You have to initialize the model with valid token embeddings")
+                inputs_embeds = self.embed_tokens(input_ids)
+            batch_size, seq_length = input_shape
+            device = inputs_embeds.device
+            hidden_states = self.dropout(inputs_embeds)
+        else:
+            if hidden_states is None:
+                raise ValueError(
+                    "hidden_states shouldn't be None for stages other than the first stage of encoder/decoder.")
+            input_shape = hidden_states.size()[:-1]
+            batch_size, seq_length = input_shape[0], input_shape[1]
+            device = hidden_states.device
+
+        # required mask seq length can be calculated via length of past
+        mask_seq_length = past_key_values[0][0].shape[2] + seq_length if past_key_values is not None else seq_length
+
+        if attention_mask is None:
+            attention_mask = torch.ones(batch_size, mask_seq_length, device=device)
+        if in_decoder and encoder_attention_mask is None and encoder_hidden_states is not None:
+            encoder_seq_length = encoder_hidden_states.shape[1]
+            encoder_attention_mask = torch.ones(batch_size, encoder_seq_length, device=device, dtype=torch.long)
+
+        # initialize past_key_values with `None` if past does not exist
+        if past_key_values is None:
+            past_key_values = [None] * len(self.block)
+
+        # We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
+        # ourselves in which case we just need to make it broadcastable to all heads.
+        extended_attention_mask = self.get_extended_attention_mask(attention_mask, input_shape)
+
+        # If a 2D or 3D attention mask is provided for the cross-attention
+        # we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
+        if self.is_decoder and encoder_hidden_states is not None:
+            encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
+            encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
+            if encoder_attention_mask is None:
+                encoder_attention_mask = torch.ones(encoder_hidden_shape, device=inputs_embeds.device)
+            encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
+        else:
+            encoder_extended_attention_mask = None
+
+        # Prepare head mask if needed
+        head_mask = self.get_head_mask(head_mask, self.config.num_layers)
+        cross_attn_head_mask = self.get_head_mask(cross_attn_head_mask, self.config.num_layers)
+        present_key_value_states = () if use_cache else None
+        all_hidden_states = () if output_hidden_states else None
+        all_attentions = () if output_attentions else None
+        all_cross_attentions = () if (output_attentions and self.is_decoder) else None
+
+        # Going through held blocks.
+        start_idx, end_idx = stage_index[0], stage_index[1]
+
+        for i in range(start_idx, end_idx):
+
+            past_key_value = past_key_values[i]
+            layer_module = self.block[i]
+            layer_head_mask = head_mask[i]
+            cross_attn_layer_head_mask = cross_attn_head_mask[i]
+            torch.cuda.set_device(hidden_states.device)
+
+            if self.gradient_checkpointing and self.training:
+
+                def create_custom_forward(module):
+
+                    def custom_forward(*inputs):
+                        return tuple(module(*inputs, use_cache, output_attentions))
+
+                    return custom_forward
+
+                layer_outputs = checkpoint(
+                    create_custom_forward(layer_module),
+                    hidden_states,
+                    extended_attention_mask,
+                    position_bias,
+                    encoder_hidden_states,
+                    encoder_extended_attention_mask,
+                    encoder_decoder_position_bias,
+                    layer_head_mask,
+                    cross_attn_layer_head_mask,
+                    None,    # past_key_value is always None with gradient checkpointing
+                )
+            else:
+                layer_outputs = layer_module(
+                    hidden_states,
+                    attention_mask=extended_attention_mask,
+                    position_bias=position_bias,
+                    encoder_hidden_states=encoder_hidden_states,
+                    encoder_attention_mask=encoder_extended_attention_mask,
+                    encoder_decoder_position_bias=encoder_decoder_position_bias,
+                    layer_head_mask=layer_head_mask,
+                    cross_attn_layer_head_mask=cross_attn_layer_head_mask,
+                    past_key_value=past_key_value,
+                    use_cache=use_cache,
+                    output_attentions=output_attentions,
+                )
+
+            # layer_outputs is a tuple with:
+            # hidden-states, key-value-states, (self-attention position bias), (self-attention weights), (cross-attention position bias), (cross-attention weights)
+
+            if use_cache is False or use_cache is None:
+                layer_outputs = layer_outputs[:1] + (None,) + layer_outputs[1:]
+            hidden_states, present_key_value_state = layer_outputs[:2]
+            # print(stage, len(layer_outputs), present_key_value_state.shape)
+
+            # We share the position biases between the layers - the first layer store them
+            # layer_outputs = hidden-states, key-value-states (self-attention position bias), (self-attention weights),
+            # (cross-attention position bias), (cross-attention weights)
+            position_bias = layer_outputs[2]
+
+            if self.is_decoder and encoder_hidden_states is not None:
+                encoder_decoder_position_bias = layer_outputs[4 if output_attentions else 3]
+            # append next layer key value states
+            if use_cache:
+                present_key_value_states = present_key_value_states + (present_key_value_state,)
+
+        # last layer
+        if at_last_stage:
+            hidden_states = self.final_layer_norm(hidden_states)
+            hidden_states = self.dropout(hidden_states)
+
+            if not return_dict:
+                return tuple(v for v in [
+                    hidden_states,
+                    present_key_value_states,
+                    all_hidden_states,
+                    all_attentions,
+                    all_cross_attentions,
+                ] if v is not None)
+            return BaseModelOutputWithPastAndCrossAttentions(
+                last_hidden_state=hidden_states,
+                past_key_values=present_key_value_states,
+                hidden_states=all_hidden_states,
+                attentions=all_attentions,
+                cross_attentions=all_cross_attentions,
+            )
+        else:
+            return {
+                'hidden_states': hidden_states,
+                'position_bias': position_bias,
+                'encoder_decoder_position_bias': encoder_decoder_position_bias
+            }
+
+    @staticmethod
+    def t5_encoder_model_forward(
+        self: T5EncoderModel,
+        input_ids: Optional[torch.LongTensor] = None,
+        attention_mask: Optional[torch.FloatTensor] = None,
+        head_mask: Optional[torch.FloatTensor] = None,
+        inputs_embeds: Optional[torch.FloatTensor] = None,
+        output_attentions: Optional[bool] = None,
+        output_hidden_states: Optional[bool] = None,
+        return_dict: Optional[bool] = None,
+        stage_manager: Optional[PipelineStageManager] = None,
+        hidden_states: Optional[torch.FloatTensor] = None,
+        position_bias: Optional[torch.Tensor] = None,
+        encoder_decoder_position_bias: Optional[torch.Tensor] = None,
+        stage_index: Optional[List[int]] = None,
+        decoder_starting_stage: Optional[int] = None,
+    ) -> Union[Tuple[torch.FloatTensor], BaseModelOutput]:
+        r"""
+        This function is modified on the basis of transformers.models.t5.modeling_gpt2.T5EncoderModel.forward.
+        Please refer to original code of transformers for more details.
+        ```"""
+        return_dict = return_dict if return_dict is not None else self.config.use_return_dict
+
+        outputs = T5PipelineForwards.t5_stack_forward(self.encoder,
+                                                      input_ids=input_ids,
+                                                      attention_mask=attention_mask,
+                                                      inputs_embeds=inputs_embeds,
+                                                      head_mask=head_mask,
+                                                      output_attentions=output_attentions,
+                                                      output_hidden_states=output_hidden_states,
+                                                      return_dict=return_dict,
+                                                      stage_manager=stage_manager,
+                                                      hidden_states=hidden_states,
+                                                      position_bias=position_bias,
+                                                      encoder_decoder_position_bias=encoder_decoder_position_bias,
+                                                      stage_index=stage_index,
+                                                      decoder_starting_stage=decoder_starting_stage)
+
+        return outputs

colossalai/shardformer/policies/t5.py

@@ -1,3 +1,8 @@
+from functools import partial
+from typing import Callable, Dict, List, Optional, Tuple
+
+from torch import Tensor, nn
+
 from colossalai.shardformer.layer import (
     DropoutForParallelInput,
     Embedding1D,
@@ -8,9 +13,11 @@ from colossalai.shardformer.layer import (
 )
 from colossalai.shardformer.policies.base_policy import ModulePolicyDescription
 
+from .._utils import getattr_, setattr_
+from ..modeling.t5 import T5PipelineForwards
 from .base_policy import ModulePolicyDescription, Policy, SubModuleReplacementDescription
 
-__all__ = ["T5ModelPolicy", "T5ForConditionalGenerationPolicy", "T5EncoderPolicy"]
+__all__ = ["distribute_t5_layers", "T5ModelPolicy", "T5ForConditionalGenerationPolicy", "T5EncoderPolicy"]
 
 
 class T5BasePolicy(Policy):
@@ -166,6 +173,123 @@ class T5BasePolicy(Policy):
     def postprocess(self):
         return self.model
 
+    @staticmethod
+    def distribute_t5_layers(num_encoder_layers: int, num_decoder_layers: int,
+                             num_stages: int) -> Tuple[List[int], int]:
+        """
+        Distribute t5 layers into stages when pipeline parallel is used.
+        Return the layer distribution as a list and the starting stage of decoder.
+        If decoder doesn't exist, returned decoder starting stage is set to num_encoder_layers.
+        """
+
+        # number of encoder layers must be a positive integer
+        if num_encoder_layers <= 0:
+            raise ValueError("The number of encoder layers for T5 must be a positive integer.")
+
+        # number of layers should be large enough to fill in every stage
+        if num_encoder_layers + num_decoder_layers < num_stages:
+            raise ValueError("The total number of layers can't be smaller than number of stages.")
+
+        # in the case of T5EncoderModel, set decoder starting stage to num_stages since it doesn't exist
+        if num_decoder_layers == 0:
+            return Policy.distribute_layers(num_encoder_layers, num_stages), num_stages
+
+        # the number of stages distributed between encoder and decoder is optmized in this way:
+        # num_encoder_stages = argmin(abs(num_encoder_layers / encoder_stages - num_decoder_layers / decoder_stages))
+        #                   s.t. num_encoder_stages + num_decoder_stages = num_stages, num_encoder_stages >= 1, num_decoder_stages >= 1
+        def objective(num_encoder_stages):
+            return abs(num_encoder_layers / num_encoder_stages - num_decoder_layers / (num_stages - num_encoder_stages))
+
+        num_encoder_stages = 0
+        optimal_diff = 2**31 - 1
+        for i in range(1, num_stages):
+            attempt = objective(i)
+            if attempt < optimal_diff:
+                num_encoder_stages = i
+                optimal_diff = attempt
+        num_decoder_stages = num_stages - num_encoder_stages
+
+        encoder_distribution = Policy.distribute_layers(num_encoder_layers, num_encoder_stages)
+        decoder_distribution = Policy.distribute_layers(num_decoder_layers, num_decoder_stages)
+        return encoder_distribution + decoder_distribution, num_encoder_stages
+
+    @staticmethod
+    def get_t5_stage_index(layers_per_stage: List[int], stage: int,
+                           decoder_starting_stage: int) -> Tuple[bool, int, int]:
+        """
+        Input the distribution of layers among stages, the current stage and the first stage of decoder.
+        Return the starting/ending idx of layers in encoder/decoder
+        """
+        if stage < decoder_starting_stage:
+            return Policy.get_stage_index(layers_per_stage[:decoder_starting_stage], stage)
+        else:
+            return Policy.get_stage_index(layers_per_stage[decoder_starting_stage:], stage - decoder_starting_stage)
+
+    def get_held_layers(self) -> List[nn.Module]:
+        """Get pipeline layers for current stage."""
+        assert self.pipeline_stage_manager is not None
+        stage_manager = self.pipeline_stage_manager
+
+        model = self.model
+        encoder = self.model.encoder
+        decoder = self.model.__dict__.get('decoder', None)
+
+        num_encoder_layers = len(encoder.block)
+        num_decoder_layers = len(decoder.block) if decoder else 0
+
+        held_layers = []
+        layers_per_stage, decoder_starting_stage = T5BasePolicy.distribute_t5_layers(
+            num_encoder_layers, num_decoder_layers, stage_manager.num_stages)
+        start_idx, end_idx = T5BasePolicy.get_t5_stage_index(layers_per_stage, stage_manager.stage,
+                                                             decoder_starting_stage)
+
+        if stage_manager.stage < decoder_starting_stage:
+            # current stage is in t5's encoder
+            if stage_manager.is_first_stage():
+                held_layers.append(model.shared)
+                held_layers.append(encoder.embed_tokens)
+                held_layers.append(encoder.dropout)
+            if stage_manager.stage == decoder_starting_stage - 1:
+                held_layers.append(encoder.final_layer_norm)
+                held_layers.append(encoder.dropout)
+            held_layers.extend(encoder.block[start_idx:end_idx])
+        else:
+            # current stage is in t5's decoder
+            if stage_manager.stage == decoder_starting_stage:
+                held_layers.append(decoder.embed_tokens)
+                held_layers.append(decoder.dropout)
+            if stage_manager.is_last_stage():
+                held_layers.append(decoder.final_layer_norm)
+                held_layers.append(decoder.dropout)
+            held_layers.extend(decoder.block[start_idx:end_idx])
+        return held_layers
+
+    def set_pipeline_forward(self, model_cls: nn.Module, new_forward: Callable, policy: Dict) -> None:
+        """If under pipeline parallel setting, replacing the original forward method of huggingface
+           to customized forward method, and add this changing to policy."""
+        if not self.pipeline_stage_manager:
+            raise ValueError("set_pipeline_forward method can only be called when pipeline parallel is enabled.")
+        stage_manager = self.pipeline_stage_manager
+
+        encoder = self.model.encoder
+        decoder = self.model.__dict__.get('decoder', None)
+
+        num_encoder_layers = len(encoder.block)
+        num_decoder_layers = len(decoder.block) if decoder else 0
+
+        layers_per_stage, decoder_starting_stage = T5BasePolicy.distribute_t5_layers(
+            num_encoder_layers, num_decoder_layers, stage_manager.num_stages)
+        stage_index = T5BasePolicy.get_t5_stage_index(layers_per_stage, stage_manager.stage, decoder_starting_stage)
+
+        method_replacement = {
+            'forward':
+                partial(new_forward,
+                        stage_manager=stage_manager,
+                        stage_index=stage_index,
+                        decoder_starting_stage=decoder_starting_stage)
+        }
+        self.append_or_create_method_replacement(description=method_replacement, policy=policy, target_key=model_cls)
+
 
 class T5ModelPolicy(T5BasePolicy):
 
@@ -182,6 +306,15 @@ class T5ModelPolicy(T5BasePolicy):
                                                         target_key=T5Model)
         return base_policy
 
+    def postprocess(self):
+        if self.shard_config.enable_tensor_parallelism:
+            binding_map = {"shared.weight": ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight"]}
+            for k, v in binding_map.items():
+                src = getattr_(self.model, k)
+                for dst in v:
+                    setattr_(self.model, dst, src)
+        return self.model
+
 
 class T5ForConditionalGenerationPolicy(T5BasePolicy):
 
@@ -204,19 +337,55 @@ class T5ForConditionalGenerationPolicy(T5BasePolicy):
                                                         target_key=T5ForConditionalGeneration)
         return policy
 
+    def postprocess(self):
+        super().postprocess()
+        if self.shard_config.enable_tensor_parallelism and self.pipeline_stage_manager is None:
+            binding_map = {
+                "shared.weight": ["encoder.embed_tokens.weight", "decoder.embed_tokens.weight", "lm_head.weight"]
+            }
+            for k, v in binding_map.items():
+                src = getattr_(self.model, k)
+                for dst in v:
+                    setattr_(self.model, dst, src)
+
+        return self.model
+
 
 class T5EncoderPolicy(T5BasePolicy):
 
+    def __init__(self) -> None:
+        super().__init__()
+
     def module_policy(self):
         from transformers import T5EncoderModel
 
-        base_policy = super().module_policy()
+        policy = super().module_policy()
 
         if self.shard_config.enable_tensor_parallelism:
             self.append_or_create_submodule_replacement(description=SubModuleReplacementDescription(
                 suffix="shared",
                 target_module=VocabParallelEmbedding1D,
             ),
-                                                        policy=base_policy,
+                                                        policy=policy,
                                                         target_key=T5EncoderModel)
-        return base_policy
+
+        if self.pipeline_stage_manager is not None:
+            self.set_pipeline_forward(model_cls=T5EncoderModel,
+                                      new_forward=T5PipelineForwards.t5_encoder_model_forward,
+                                      policy=policy)
+        return policy
+
+    def get_held_layers(self) -> List[nn.Module]:
+        return super().get_held_layers()
+
+    def get_shared_params(self) -> List[Dict[int, Tensor]]:
+        return []
+
+    def postprocess(self):
+        if self.shard_config.enable_tensor_parallelism:
+            binding_map = {"shared.weight": ["encoder.embed_tokens.weight"]}
+            for k, v in binding_map.items():
+                src = getattr_(self.model, k)
+                for dst in v:
+                    setattr_(self.model, dst, src)
+        return self.model

tests/kit/model_zoo/transformers/gpt.py

@@ -62,10 +62,8 @@ output_transform_fn = lambda x: x
 loss_fn_for_gpt2_model = lambda x: x.last_hidden_state.mean()
 loss_fn = lambda x: x.loss
 
-config = transformers.GPT2Config(
-    n_layer=2,
+config = transformers.GPT2Config(n_layer=2,
                                  n_head=4,
-    #n_embd=128,
                                  vocab_size=50258,
                                  attn_pdrop=0,
                                  embd_pdrop=0,

tests/test_pipeline/test_policy/test_t5_pipeline_utils.py

@@ -0,0 +1,39 @@
+from colossalai.shardformer.policies.t5 import T5BasePolicy
+
+
+def test_t5_pipeline_distribution():
+    num_test_cases = 8
+    test_dict = {
+        'num_encoder_layers': [2, 1, 3, 2, 3, 2, 10, 5],
+        'num_decoder_layers': [2, 8, 0, 2, 1, 5, 6, 22],
+        'num_stages': [2, 2, 2, 4, 4, 4, 8, 8],
+        'decoder_starting_stage': [1, 1, 2, 2, 3, 1, 5, 2]
+    }
+
+    for i in range(num_test_cases):
+        _, decoder_starting_stage = T5BasePolicy.distribute_t5_layers(test_dict['num_encoder_layers'][i],
+                                                                      test_dict['num_decoder_layers'][i],
+                                                                      test_dict['num_stages'][i])
+        assert test_dict['decoder_starting_stage'][i] == decoder_starting_stage
+
+
+def test_t5_pipeline_layers():
+    num_test_cases = 4
+    test_dict = {
+        'num_encoder_layers': [2, 3, 2, 4],
+        'num_decoder_layers': [2, 0, 2, 8],
+        'num_stages': [2, 2, 4, 4],
+        'layers_per_stage': [[[0, 2], [0, 2]], [[0, 1], [1, 3]], [[0, 1], [1, 2], [0, 1], [1, 2]],
+                             [[0, 4], [0, 3], [3, 6], [6, 8]]]
+    }
+
+    for i in range(num_test_cases):
+        layers_per_stage, decoder_starting_stage = T5BasePolicy.distribute_t5_layers(
+            test_dict['num_encoder_layers'][i], test_dict['num_decoder_layers'][i], test_dict['num_stages'][i])
+
+        for stage in range(test_dict['num_stages'][i]):
+            start_idx, end_idx = test_dict['layers_per_stage'][i][stage]
+            predicted_start, predicted_end = T5BasePolicy.get_t5_stage_index(layers_per_stage, stage,
+                                                                             decoder_starting_stage)
+            assert start_idx == predicted_start
+            assert end_idx == predicted_end

tests/test_shardformer/test_model/test_shard_gpt2_pipeline.py

@@ -29,9 +29,11 @@ def run_gpt2_test(enable_fused_normalization, enable_tensor_parallelism, use_laz
     for name, (model_fn, data_gen_fn, _, _, _) in sub_model_zoo.items():
         inputs = data_gen_fn()
         inputs = {k: v.cuda() for k, v in inputs.items()}
-        input_ids, _ = inputs['input_ids'], inputs['attention_mask']
+        _, sharded_model = build_pipeline_model(model_fn, stage_manager, enable_fused_normalization,
+                                                enable_tensor_parallelism, use_lazy_init)
+        input_ids = inputs['input_ids']
         batch_size, seq_len = input_ids.shape
-        hidden_size = 768
+        hidden_size = sharded_model.config.n_embd
         hidden_state_shape = (batch_size, seq_len, hidden_size)
 
         if not stage_manager.is_first_stage():
@@ -40,12 +42,12 @@ def run_gpt2_test(enable_fused_normalization, enable_tensor_parallelism, use_laz
             inputs['input_ids'] = None
             inputs['hidden_states'] = hidden_states
 
-        _, sharded_model = build_pipeline_model(model_fn, stage_manager, enable_fused_normalization,
-                                                enable_tensor_parallelism, use_lazy_init)
         sharded_model.train()
         output = sharded_model(**inputs)
         if stage_manager.is_last_stage():
-            if name != 'transformers_gpt':
+            if name == 'transformers_gpt':
+                assert output[0].shape == hidden_state_shape
+            else:
                 assert output.loss is not None
         else:
             assert output['hidden_states'].shape == hidden_state_shape

tests/test_shardformer/test_model/test_shard_t5_pipeline.py

@@ -0,0 +1,96 @@
+import pytest
+import torch
+
+import colossalai
+from colossalai.cluster import ProcessGroupMesh
+from colossalai.logging import disable_existing_loggers
+from colossalai.pipeline.stage_manager import PipelineStageManager
+from colossalai.shardformer.policies.t5 import T5BasePolicy
+from colossalai.testing import clear_cache_before_run, parameterize, rerun_if_address_is_in_use, spawn
+from tests.kit.model_zoo import model_zoo
+from tests.test_shardformer.test_model._utils import build_pipeline_model
+
+
+def check_forward_backward(org_model, sharded_model, data_gen_fn, output_transform_fn, loss_fn):
+    # TODO: add tests for forward/backward later
+    pass
+
+
+@parameterize('enable_tensor_parallelism', [False])
+@parameterize('enable_fused_normalization', [False])
+@parameterize('use_lazy_init', [False])
+#TODO: merge this into test_shard_t5.py
+def run_t5_test(enable_fused_normalization, enable_tensor_parallelism, use_lazy_init):
+    DP_DIM, PP_DIM = 0, 1
+    DP_SIZE, PP_SIZE = 2, 2
+    pg_mesh = ProcessGroupMesh(DP_SIZE, PP_SIZE)
+    stage_manager = PipelineStageManager(pg_mesh, PP_DIM)
+
+    sub_model_zoo = model_zoo.get_sub_registry('transformers_t5')
+    for name, (model_fn, data_gen_fn, _, _, _) in sub_model_zoo.items():
+        if name != 'transformers_t5_encoder_model':
+            continue
+
+        inputs = data_gen_fn()
+        inputs = {k: v.cuda() for k, v in inputs.items()}
+        input_ids = inputs['input_ids']
+
+        _, sharded_model = build_pipeline_model(model_fn, stage_manager, enable_fused_normalization,
+                                                enable_tensor_parallelism, use_lazy_init)
+
+        batch_size, seq_len = input_ids.shape
+        hidden_size = sharded_model.config.d_model
+        num_heads = sharded_model.config.num_heads
+        hidden_state_shape = (batch_size, seq_len, hidden_size)
+        position_bias_shape = (batch_size, num_heads, seq_len, seq_len)
+
+        num_encoder_layers = len(sharded_model.encoder.block)
+        decoder = sharded_model.__dict__.get('decoder', None)
+        num_decoder_layers = len(decoder.block) if decoder else 0
+
+        _, decoder_starting_stage = T5BasePolicy.distribute_t5_layers(num_encoder_layers, num_decoder_layers, PP_SIZE)
+        stage = stage_manager.stage
+        at_first_stage = (stage == 0) or (stage == decoder_starting_stage)
+        at_last_stage = (stage == decoder_starting_stage - 1) or (stage == stage_manager.num_stages - 1)
+
+        if not at_first_stage:
+            # change inputs if not the first stage
+            hidden_states = torch.zeros(*hidden_state_shape).cuda()
+            position_bias = torch.zeros(*position_bias_shape).cuda()
+            encoder_decoder_position_bias = torch.zeros(*position_bias_shape).cuda()
+            inputs['input_ids'] = None
+            inputs['hidden_states'] = hidden_states
+            inputs['position_bias'] = position_bias
+            inputs['encoder_decoder_position_bias'] = encoder_decoder_position_bias
+
+        sharded_model.train()
+        output = sharded_model(**inputs)
+        if at_last_stage:
+            if name != 'transformers_t5_for_conditional_generation':
+                assert output[0].shape == hidden_state_shape
+            else:
+                assert output.loss is not None
+        else:
+            assert output['hidden_states'].shape == hidden_state_shape
+            # position_bias information should be passed in T5
+            assert 'position_bias' in output
+            assert 'encoder_decoder_position_bias' in output
+
+    torch.cuda.empty_cache()
+
+
+def check_t5(rank, world_size, port):
+    disable_existing_loggers()
+    colossalai.launch(config={}, rank=rank, world_size=world_size, host='localhost', port=port, backend='nccl')
+    run_t5_test()
+
+
+@pytest.mark.dist
+@rerun_if_address_is_in_use()
+@clear_cache_before_run()
+def test_t5():
+    spawn(check_t5, 4)
+
+
+if __name__ == "__main__":
+    test_t5()