You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
|
|
|
# FastFold Inference
|
|
|
|
|
|
|
|
## Table of contents
|
|
|
|
|
|
|
|
- [FastFold Inference](#fastfold-inference)
|
|
|
|
- [Table of contents](#table-of-contents)
|
|
|
|
- [📚 Overview](#-overview)
|
|
|
|
- [🚀 Quick Start](#-quick-start)
|
|
|
|
- [🔍 Dive into FastFold](#-dive-into-fastfold)
|
|
|
|
|
|
|
|
## 📚 Overview
|
|
|
|
|
|
|
|
This example lets you to try out the inference of FastFold.
|
|
|
|
|
|
|
|
## 🚀 Quick Start
|
|
|
|
|
|
|
|
1. Install FastFold
|
|
|
|
|
|
|
|
We highly recommend you to install FastFold with conda.
|
|
|
|
```
|
|
|
|
git clone https://github.com/hpcaitech/FastFold
|
|
|
|
cd FastFold
|
|
|
|
conda env create --name=fastfold -f environment.yml
|
|
|
|
conda activate fastfold
|
|
|
|
python setup.py install
|
|
|
|
```
|
|
|
|
|
|
|
|
2. Download datasets.
|
|
|
|
|
|
|
|
It may take ~900GB space to keep datasets.
|
|
|
|
```
|
|
|
|
./scripts/download_all_data.sh data/
|
|
|
|
```
|
|
|
|
|
|
|
|
3. Run the inference scripts.
|
|
|
|
|
|
|
|
```
|
|
|
|
bash inference.sh
|
|
|
|
```
|
|
|
|
You can find predictions under the `outputs` dir.
|
|
|
|
|
|
|
|
## 🔍 Dive into FastFold
|
|
|
|
|
|
|
|
There are another features of FastFold, such as:
|
|
|
|
+ more excellent kernel based on triton
|
|
|
|
+ much faster data processing based on ray
|
|
|
|
+ training supported
|
|
|
|
|
|
|
|
More detailed information can be seen [here](https://github.com/hpcaitech/FastFold/).
|